Gene Rpal_5168 details

Gene Information

• Locus tag: Rpal_5168
• ID: 6412868
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 5571290
• End bp: 5573341
• Gene Length: 2052 bp
• Protein Length: 683 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 642715058
• Product: glycosyl transferase family 2
• Protein accession: YP_001994131
• Protein GI: 192293526
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTCCTAA CCGACCGCGC CGGACTGCAC GAGACGATGA CCGACGGGGG CGGCGATGAT 
GAGGCAACTG CCCCATCGCC CGGGCCGCCC CGCTTTCTCG CCGCTTGGCC TCCCCCGGTC 
AGCAACGACA ATCATCAGGG CGATGAGTGG TGCGAGGCTC GGGACAGCCA ATCCGAAGCG 
ATCGCAGCGC CGGAGCTGGA TTGCCTACGC GGCGTGCTGG CGCCGACACT GCTGCACGCC 
GCCGCCGAAC GGGCCAAAGA CCTCGACATC GGAGCAGACC GCGTCCTGAT CCAGCAGGGT 
CTGATCGATG AGGACGCGTA TCTCCGCTAT CTCACCCGCT GGCTTCGCCT CGGTTTCGAA 
GACTTCGGCG AGTTCAGCCG CACCGACTGT CCGCTGGAAG ACGCGCAGAT CCCCTCCGCC 
ACCGCGACCG GAATCGTGCC GCTCCGGGTC GATGACGAAT TGGTCTGGGT GGTGGCGCCG 
CGGCGCCTTG TGAGCCATCG GCTGTGCGGG CTGCTGGACG ACTATCCGGA CACACGACCG 
CGGCTACGAT TAGCCTCGGC GGCGGCACTG GAGACCTTTC TGGCGCGGCA GGGCGACCGC 
GCGCTGGCCA ACATCGCCAG CGCCGATCTG CACCAGCGCC ATCCGATGCT GTCGGCGGCA 
CCCCGCAAGG CCGGACCGAT ATGGCGGCAA CGCCTCAAGC GCGGAGCCTG CGTGGCAGCC 
CTGCTCGCCC TGCCGTTCTT CCCTGATCCC GACGTCACGA CGACGCTGCT GGCGGCCTGG 
TTCATCGGCT TTGCCGGATT GCGGCTGCTG GCCTGCTTGT GGCCGCGCCC GACCTTGCCA 
CCGTCGCCGC GAAAGCCGGA CGCAGAGCTA CCGACCTATA CGGTGGTGGC GGCGCTGTAT 
CGCGAAGCCG ACTCGGTGGG GCCGCTGGTC GAAGCCCTCG AAGCGCTCGA CTACCCGCGC 
GAGAAGCTCG ACCTGATCCT GGTGATCGAG CCCGACGACC TCGCCACCCG CGCGGCGCTG 
GCCCGGATCA AGCGGCGACC GCATCTGCGG GTGCTGATCG CGCCGGCCGT CGAACCAAGA 
ACCAAGCCGA AGGCGCTGAA CTACGCCCTC GCCTTCGCGC GCGGCAGTTT CATTGCGGTG 
TACGACGCCG AAGATCGGCC CGATCCCGAC CAATTGCGGG CGGCGCTGGC GGCGTTCGAC 
GCCACCGGCC CGGAGACGGC TTGCGTGCAG GCCAGCCTGT GCATCGACAA CCTCACCCAT 
AGCTGGCTGT CTCGCACGTT CCTCGCCGAA TATGCCGGTC AGTTCGACCT GTTTCTGCCG 
GGCCTTGCGG CACTCGGCCT GCCGCTGCCG CTCGGCGGCA CCTCGAACCA TTTCCGCACC 
GAGGTGCTGC GGGGCATCGG CGGATGGGAT CCGCACAACG TCACCGAAGA TGCCGATCTC 
GGCTTCCGGC TCGCCCGGTT CGGCCACCGC TGCGTCACCA TCCCCTCGAC CACCTACGAA 
GAGGCGCCGA TCGCCTTTCG CAATTGGCTG CCGCAGCGGG CGCGCTGGAT GAAGGGCTGG 
ATCCAGACCT GGGAAGTGCA TATGCGGCAC CCGATCCGGC TGTGGCGCGA GATCGGATGG 
CGTGGCGTGG TCGGCCTCAA CCTGGTGGTC GGCGGCAACG TGCTGTCGGC CCTCGCCTAT 
CCGCTGCTGG TGCTGCTCGC CGTGATGTCC GCGGCAGACT GGGCGGATCT TGTGCCCGTC 
TGGCTCGACG GCTGGCTGGA GCCCGCGGCG CCGAGCGCGC TGCACTGGCT CACAATCGCA 
TCCGGCGTTG CATCGACATT GGTGGTCGGC TTGCTCGGCC TCGCCCGGCG GCGGCAATTG 
CGGCACGCCG GGGCGTTGGC GCTGACGCCG CTCTATTGGC TGTGCCTATC GGTGGCGGCG 
TGGCGCGCGC TGGCGCAATT CGTCTGGTGT CCGTACCGCT GGGACAAGAC TCAGCACGGC 
GTTGCCCGCC GTCCGCATCC GCTGGCGCCG AAGCCAAAAG CCCGGCGGTC GCGATGGCGG 
CTGTCGGCGT AA 

 

Protein sequence

MVLTDRAGLH ETMTDGGGDD EATAPSPGPP RFLAAWPPPV SNDNHQGDEW CEARDSQSEA 
IAAPELDCLR GVLAPTLLHA AAERAKDLDI GADRVLIQQG LIDEDAYLRY LTRWLRLGFE 
DFGEFSRTDC PLEDAQIPSA TATGIVPLRV DDELVWVVAP RRLVSHRLCG LLDDYPDTRP 
RLRLASAAAL ETFLARQGDR ALANIASADL HQRHPMLSAA PRKAGPIWRQ RLKRGACVAA 
LLALPFFPDP DVTTTLLAAW FIGFAGLRLL ACLWPRPTLP PSPRKPDAEL PTYTVVAALY 
READSVGPLV EALEALDYPR EKLDLILVIE PDDLATRAAL ARIKRRPHLR VLIAPAVEPR 
TKPKALNYAL AFARGSFIAV YDAEDRPDPD QLRAALAAFD ATGPETACVQ ASLCIDNLTH 
SWLSRTFLAE YAGQFDLFLP GLAALGLPLP LGGTSNHFRT EVLRGIGGWD PHNVTEDADL 
GFRLARFGHR CVTIPSTTYE EAPIAFRNWL PQRARWMKGW IQTWEVHMRH PIRLWREIGW 
RGVVGLNLVV GGNVLSALAY PLLVLLAVMS AADWADLVPV WLDGWLEPAA PSALHWLTIA 
SGVASTLVVG LLGLARRRQL RHAGALALTP LYWLCLSVAA WRALAQFVWC PYRWDKTQHG 
VARRPHPLAP KPKARRSRWR LSA