Gene Rpal_4871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4871 
Symbol 
ID6412557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp5235086 
End bp5237359 
Gene Length2274 bp 
Protein Length757 aa 
Translation table11 
GC content65% 
IMG OID642714748 
ProductTonB-dependent receptor 
Protein accessionYP_001993835 
Protein GI192293230 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.782925 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTTGTC ACATCAAACG CGGCCTTGCG GCGTCGAGCT CTGCCACGCT GCTGTTAGCC 
GCTCTGAGTT CACCAAGTCT GGCGCAAAGC GCTGCGCCGG CCAGCCGCGG CGCGACACCA
CTTCCAGAAA TCGACGTGAT CCAGCCGCAG CGTGCGCCCC ACCCGGCTCG ACGCCCAAAG
ACTCAAACCG CAGCCCGGGC GCGCCGCGGG GCAGCGACAG CCTCGCCGCA GCACGACGCC
CAAACGCCTG CGCAAACTGC GGCACAAGCC ATCGCGGCCA AACATGCGGG CTTCGATGCT
GCGCGGCAGA CGATCTTTGC GCCGAATGGC GCGAGCGCCT TCGACGTCAA TCATGAGGCC
ATCCTGGCAC TGCCGCAGGG CGCCAATGCG ACGCTCGACA AGGTGCTGTT GCAGGCGCCC
GGCGTCTCGC AAGACTCCGC GGCCAGCGGC GATCTGCACG TCCGCAACGA GCACGCCAAT
GTGCAGTACC GGATCAACGG CATCGCTTTG CCCGACGGCG TCAGCGGCTT CGGCCAGATG
CTCGATACGT CGCTGGTCGG ACGCTTAACG CTGCTGACCG GCGCGCTGCC GGCGCAATAC
GGCCTCCGCA CCGCCGGCGT CGTCGACATC ACCACGCGCA CCGACGCCTT CAACAACAGC
GGCACCGTCA GCGTCTATGG CGGCAGCCGC CAGACCATCA CGCCGAGCGT CGAATATGGC
GGCACCGCCG GCAACACCCA GTATTTCATC TCTGGCCGCT ACTTCGGGAC CGGGCTCGGG
CTGGAGAACC CGACCTCGTC GCCGAACGCG ATCCATGACG ATTCCCAGCA GGGCAGAGGC
TTCGCCTATC TGTCGACCGT GATCGACGAC ACGACGCGGC TGACCTTTAT CGGCGGCGGT
TCGGCCAACA ACTACCAGAT CCCCAACAAC CCGGGCCAGA CGCCCGGCTT TACGGCGTTC
GGCGTGTCGA ATTTCGACTC GGCGCAGCTC AACGAGACCC AGCGCGAACG CAACGCCTTC
GGCGTGCTGG CGCTGCAGAA GTCGATCAAT GGCTTCGACC TGCAGATGTC GGCATTCTCG
CGCTATAGCA TGCTGCACTT CACGCCAGAC ACGGTCGGCG ATCTGGTGTT CAACGGCGTC
GCCTCTGACG TCTATCGCCG AAGCGTCGCC AGCGGCATCC AGGCCGACGG CTCGTACCGG
CTCAGCGACG CGCATACGCT GCGCGGCGGC TTCCAGGTCA CCGCCGAGCA AAGCCGGGTG
ACCAACTCCT CGGTGGTGCT GCCGCTCGAC GACAGCGGCA ACCCGCTGGA CGCGCCGTTC
GGCGTCGTCG ACTCCAGCAG CAAGCTCGGC TGGCTGTTCA GCACCTATCT GCAGGACGAA
TGGCGGGTCA CCAACACGGT GACGCTGAAC TCCGGCCTGC GCTTTGATCA AATGAACGAA
TACACCAACG CCAATCAGCT CAGCCCGCGC ATCAGCCTGA CCTGGAAACC GACCGAGGAC
ACCACGTTCC ACGCCGGCTA TTCGCGCAAC TTCACGCCGC CCGCGCAGGT GCTGGCGGCG
CCGACCAATC TGGCGCTGGT GCAGAACACC ACGCAGCAGC CCGCCGTCAA CGCCAACAGC
CCGGTGCTGC CGGAGCGGTC GAACGTGTTT GATGTCGGCG TCACGCAGAA GCTGCTGCCC
GGCCTCGAGG TCGGCATCGA CACCTACTAC AAGACCGCGC GCGATCTGCT CGACGATGGC
CAGTTCGGCG CCGCCTATGT GCTGTCGGCG TTCAACTACG ACCGCGCCGA GAATGTCGGC
ATCGAGTTCA AGGGCGCGTA CACCAACGGC AACTTCCGGA TCTACGGCAA TCTGGCGCTG
GCGCGGCAGA TCGCCACCAA GGTTGTCTCG AACCAGTATT TGTTCGATCC GGACGAGCTC
GCCTACATCG CCAGCAACTA CATCTACACC GACCACGCGC AACTGGTGAC GGCGTCAGCC
GGCGCATCGT ATCGCTGGCA CGATACCAAT TTCAGCGCGT CGATGATCTA TGGCAGCGGA
TTGCGCTCCG GCTTTGCCAA TATCGGATCG CTGCCGTCCT ACACCCAGGT CAATCTGGGC
GTATCGCACG ATTTCTATCT GGTGAGCGCG ACCAAGCCGA CCACGGTACG GTTCGACGTC
GTCAACCTGT TCGACAGCGT GTACGAAATC CGCGACGGCT CGGGGATCGG CGTGTTCGCG
CCGCAATATG GTCCGCGGCG CGGCTTCTAT GTCGGCGTGG CGCAGAAGTT CTGA
 
Protein sequence
MFCHIKRGLA ASSSATLLLA ALSSPSLAQS AAPASRGATP LPEIDVIQPQ RAPHPARRPK 
TQTAARARRG AATASPQHDA QTPAQTAAQA IAAKHAGFDA ARQTIFAPNG ASAFDVNHEA
ILALPQGANA TLDKVLLQAP GVSQDSAASG DLHVRNEHAN VQYRINGIAL PDGVSGFGQM
LDTSLVGRLT LLTGALPAQY GLRTAGVVDI TTRTDAFNNS GTVSVYGGSR QTITPSVEYG
GTAGNTQYFI SGRYFGTGLG LENPTSSPNA IHDDSQQGRG FAYLSTVIDD TTRLTFIGGG
SANNYQIPNN PGQTPGFTAF GVSNFDSAQL NETQRERNAF GVLALQKSIN GFDLQMSAFS
RYSMLHFTPD TVGDLVFNGV ASDVYRRSVA SGIQADGSYR LSDAHTLRGG FQVTAEQSRV
TNSSVVLPLD DSGNPLDAPF GVVDSSSKLG WLFSTYLQDE WRVTNTVTLN SGLRFDQMNE
YTNANQLSPR ISLTWKPTED TTFHAGYSRN FTPPAQVLAA PTNLALVQNT TQQPAVNANS
PVLPERSNVF DVGVTQKLLP GLEVGIDTYY KTARDLLDDG QFGAAYVLSA FNYDRAENVG
IEFKGAYTNG NFRIYGNLAL ARQIATKVVS NQYLFDPDEL AYIASNYIYT DHAQLVTASA
GASYRWHDTN FSASMIYGSG LRSGFANIGS LPSYTQVNLG VSHDFYLVSA TKPTTVRFDV
VNLFDSVYEI RDGSGIGVFA PQYGPRRGFY VGVAQKF