| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4871 |
|---|
| Symbol | |
|---|
| ID | 6412557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 5235086 |
|---|
| End bp | 5237359 |
|---|
| Gene Length | 2274 bp |
|---|
| Protein Length | 757 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642714748 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001993835 |
|---|
| Protein GI | 192293230 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.782925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTGTC ACATCAAACG CGGCCTTGCG GCGTCGAGCT CTGCCACGCT GCTGTTAGCC
GCTCTGAGTT CACCAAGTCT GGCGCAAAGC GCTGCGCCGG CCAGCCGCGG CGCGACACCA
CTTCCAGAAA TCGACGTGAT CCAGCCGCAG CGTGCGCCCC ACCCGGCTCG ACGCCCAAAG
ACTCAAACCG CAGCCCGGGC GCGCCGCGGG GCAGCGACAG CCTCGCCGCA GCACGACGCC
CAAACGCCTG CGCAAACTGC GGCACAAGCC ATCGCGGCCA AACATGCGGG CTTCGATGCT
GCGCGGCAGA CGATCTTTGC GCCGAATGGC GCGAGCGCCT TCGACGTCAA TCATGAGGCC
ATCCTGGCAC TGCCGCAGGG CGCCAATGCG ACGCTCGACA AGGTGCTGTT GCAGGCGCCC
GGCGTCTCGC AAGACTCCGC GGCCAGCGGC GATCTGCACG TCCGCAACGA GCACGCCAAT
GTGCAGTACC GGATCAACGG CATCGCTTTG CCCGACGGCG TCAGCGGCTT CGGCCAGATG
CTCGATACGT CGCTGGTCGG ACGCTTAACG CTGCTGACCG GCGCGCTGCC GGCGCAATAC
GGCCTCCGCA CCGCCGGCGT CGTCGACATC ACCACGCGCA CCGACGCCTT CAACAACAGC
GGCACCGTCA GCGTCTATGG CGGCAGCCGC CAGACCATCA CGCCGAGCGT CGAATATGGC
GGCACCGCCG GCAACACCCA GTATTTCATC TCTGGCCGCT ACTTCGGGAC CGGGCTCGGG
CTGGAGAACC CGACCTCGTC GCCGAACGCG ATCCATGACG ATTCCCAGCA GGGCAGAGGC
TTCGCCTATC TGTCGACCGT GATCGACGAC ACGACGCGGC TGACCTTTAT CGGCGGCGGT
TCGGCCAACA ACTACCAGAT CCCCAACAAC CCGGGCCAGA CGCCCGGCTT TACGGCGTTC
GGCGTGTCGA ATTTCGACTC GGCGCAGCTC AACGAGACCC AGCGCGAACG CAACGCCTTC
GGCGTGCTGG CGCTGCAGAA GTCGATCAAT GGCTTCGACC TGCAGATGTC GGCATTCTCG
CGCTATAGCA TGCTGCACTT CACGCCAGAC ACGGTCGGCG ATCTGGTGTT CAACGGCGTC
GCCTCTGACG TCTATCGCCG AAGCGTCGCC AGCGGCATCC AGGCCGACGG CTCGTACCGG
CTCAGCGACG CGCATACGCT GCGCGGCGGC TTCCAGGTCA CCGCCGAGCA AAGCCGGGTG
ACCAACTCCT CGGTGGTGCT GCCGCTCGAC GACAGCGGCA ACCCGCTGGA CGCGCCGTTC
GGCGTCGTCG ACTCCAGCAG CAAGCTCGGC TGGCTGTTCA GCACCTATCT GCAGGACGAA
TGGCGGGTCA CCAACACGGT GACGCTGAAC TCCGGCCTGC GCTTTGATCA AATGAACGAA
TACACCAACG CCAATCAGCT CAGCCCGCGC ATCAGCCTGA CCTGGAAACC GACCGAGGAC
ACCACGTTCC ACGCCGGCTA TTCGCGCAAC TTCACGCCGC CCGCGCAGGT GCTGGCGGCG
CCGACCAATC TGGCGCTGGT GCAGAACACC ACGCAGCAGC CCGCCGTCAA CGCCAACAGC
CCGGTGCTGC CGGAGCGGTC GAACGTGTTT GATGTCGGCG TCACGCAGAA GCTGCTGCCC
GGCCTCGAGG TCGGCATCGA CACCTACTAC AAGACCGCGC GCGATCTGCT CGACGATGGC
CAGTTCGGCG CCGCCTATGT GCTGTCGGCG TTCAACTACG ACCGCGCCGA GAATGTCGGC
ATCGAGTTCA AGGGCGCGTA CACCAACGGC AACTTCCGGA TCTACGGCAA TCTGGCGCTG
GCGCGGCAGA TCGCCACCAA GGTTGTCTCG AACCAGTATT TGTTCGATCC GGACGAGCTC
GCCTACATCG CCAGCAACTA CATCTACACC GACCACGCGC AACTGGTGAC GGCGTCAGCC
GGCGCATCGT ATCGCTGGCA CGATACCAAT TTCAGCGCGT CGATGATCTA TGGCAGCGGA
TTGCGCTCCG GCTTTGCCAA TATCGGATCG CTGCCGTCCT ACACCCAGGT CAATCTGGGC
GTATCGCACG ATTTCTATCT GGTGAGCGCG ACCAAGCCGA CCACGGTACG GTTCGACGTC
GTCAACCTGT TCGACAGCGT GTACGAAATC CGCGACGGCT CGGGGATCGG CGTGTTCGCG
CCGCAATATG GTCCGCGGCG CGGCTTCTAT GTCGGCGTGG CGCAGAAGTT CTGA
|
|---|
| Protein sequence | MFCHIKRGLA ASSSATLLLA ALSSPSLAQS AAPASRGATP LPEIDVIQPQ RAPHPARRPK
TQTAARARRG AATASPQHDA QTPAQTAAQA IAAKHAGFDA ARQTIFAPNG ASAFDVNHEA
ILALPQGANA TLDKVLLQAP GVSQDSAASG DLHVRNEHAN VQYRINGIAL PDGVSGFGQM
LDTSLVGRLT LLTGALPAQY GLRTAGVVDI TTRTDAFNNS GTVSVYGGSR QTITPSVEYG
GTAGNTQYFI SGRYFGTGLG LENPTSSPNA IHDDSQQGRG FAYLSTVIDD TTRLTFIGGG
SANNYQIPNN PGQTPGFTAF GVSNFDSAQL NETQRERNAF GVLALQKSIN GFDLQMSAFS
RYSMLHFTPD TVGDLVFNGV ASDVYRRSVA SGIQADGSYR LSDAHTLRGG FQVTAEQSRV
TNSSVVLPLD DSGNPLDAPF GVVDSSSKLG WLFSTYLQDE WRVTNTVTLN SGLRFDQMNE
YTNANQLSPR ISLTWKPTED TTFHAGYSRN FTPPAQVLAA PTNLALVQNT TQQPAVNANS
PVLPERSNVF DVGVTQKLLP GLEVGIDTYY KTARDLLDDG QFGAAYVLSA FNYDRAENVG
IEFKGAYTNG NFRIYGNLAL ARQIATKVVS NQYLFDPDEL AYIASNYIYT DHAQLVTASA
GASYRWHDTN FSASMIYGSG LRSGFANIGS LPSYTQVNLG VSHDFYLVSA TKPTTVRFDV
VNLFDSVYEI RDGSGIGVFA PQYGPRRGFY VGVAQKF
|
|---|
| |