| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4474 |
|---|
| Symbol | |
|---|
| ID | 6412158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4811616 |
|---|
| End bp | 4812890 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642714356 |
|---|
| Product | Chloride channel core |
|---|
| Protein accession | YP_001993445 |
|---|
| Protein GI | 192292840 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0038] Chloride channel protein EriC |
|---|
| TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.125667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCG CTCTGTCCCA TCGCCACAAG CGCATCCTGA TCATCGCATC GACGCGGTCG
CGGCGGCGGG CGATCTTTCT GCTCGGGGGC GTCGTGGTCG GCGCCGCGGC GGCAGTGCTG
GCGCAGCTCG CCGATTGGGC GCAACTACTG TTCGCCGACT TGCTCGGCCA CTCGCGTTAC
CTGCCATTTG TGGTGACGCC ACTCGGCTTT CTGCTTTCGG TGTATCTGAC CAACCGCTTC
TTCCAGAACG CACAGGGCAG CGGCATCCCG CAGGCGATCG CGGCGCGGCG CCTCACTGAC
CAGACTGCGC GGGCGAAGCT GGTGTCGCTG CGGATCGCGA TCGGCAAATT CCTTCTGACG
CTGTTCGGCC TTTTGGTCGG CGCTTCGGTG GGCCGCGAGG GGCCGACGGT GCAGATCGGC
GCCTCGATCA TGTTCGCGCT CGGCCGTTTC TCGCCGCGCC GGCAGCCCGG CCTGATCCTG
GCCGGTGCCT CGGCCGGCGT CGCTGCCGCA TTCAACACTC CGCTGGCGGG TATCATCTTC
GGCATCGAGG AAATGAGTCG GTCGTTCGAA ACGCGGTCGA GCACGCTGAT CATTGCGGCT
GTGGTCGCGG CGGGCCTGAC GTCGATCGCT CTGCTCGGCA ACTACACGTA TTTCGGCACC
AGCGCGATGG GGTTGCGCGG CGGCATCGAC TGGCTGGCCA TTCCGGCGTG CGGAATCGTC
GGTGGGGCGG CCGGCGGCTT GTTCATCCGA TGTGTTGTCG CGGCAGGCGC GAGCGCGGCG
TTCAATCGCC GTCCGTTGAT CGTAGCGCTG CTCTGCGGCC TAGCTGTTGC GATCTGCGGC
TTCGTATCGG GCGATACGAT CTACGGCACC GGCTACAGCC AAGTGAAGAC GGCACTGCAG
AGCGGCACGG CGCTGCCTGA GGATTTCGGC GTGCTGAAAT TCCTCGCGAC TACGCTGTCC
TCGGTCAGCG GCCTGCCTGG CGGCATCTTC TCACCCTCGC TCGCGGTCGG CGCCGGACTC
GGCAGCAACG TCGCGGCATT GTTTCCGGCG ACGCCGATTG CGGCGATCAT GCTGCTCGGG
ATGGTGGCCT ACTTCTCCGG CGTGGTGCAG GCTCCGATCA CCGCCTTCGT CATCGTGATC
GAAATGACCG ACAACCACGC GATGGTAATC CCACTGATGG CGACCGCCCT AATCGCCTAC
GCGACCTCGC GGCTGATCGC CGAAGAAGGA ATCTACCATG CCCTCGCCAG GCGTTTCGTG
CAGCCTGCAG CGTAA
|
|---|
| Protein sequence | MKFALSHRHK RILIIASTRS RRRAIFLLGG VVVGAAAAVL AQLADWAQLL FADLLGHSRY
LPFVVTPLGF LLSVYLTNRF FQNAQGSGIP QAIAARRLTD QTARAKLVSL RIAIGKFLLT
LFGLLVGASV GREGPTVQIG ASIMFALGRF SPRRQPGLIL AGASAGVAAA FNTPLAGIIF
GIEEMSRSFE TRSSTLIIAA VVAAGLTSIA LLGNYTYFGT SAMGLRGGID WLAIPACGIV
GGAAGGLFIR CVVAAGASAA FNRRPLIVAL LCGLAVAICG FVSGDTIYGT GYSQVKTALQ
SGTALPEDFG VLKFLATTLS SVSGLPGGIF SPSLAVGAGL GSNVAALFPA TPIAAIMLLG
MVAYFSGVVQ APITAFVIVI EMTDNHAMVI PLMATALIAY ATSRLIAEEG IYHALARRFV
QPAA
|
|---|
| |