Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4414 |
Symbol | |
ID | 6412098 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4738670 |
End bp | 4742398 |
Gene Length | 3729 bp |
Protein Length | 1242 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642714296 |
Product | tetratricopeptide TPR_4 protein |
Protein accession | YP_001993385 |
Protein GI | 192292780 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.746828 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCGCGGA TGGCTGCCGC TGGAGTTTGG TCACAGGCGC TGGTCAGGCG CGTCGTACGA CTCTGCCTTG CCGGCCTACT GCTGCTGATC GCGGCCGCGC TGACCGTTGC GCCCGCGGCC GCGCAGGTCC GCGGCGAAGC CAGCTTCGAA GCGAAAGGCG GATACGGGCG GCTGCTGCTC AAGATGGCCG AGGACGTCGA GTCCGACGTC GCCACAGCAG GCCTGATCGT GGTAATCCGC TTCAAGCGAC CGATCGACAT TCCGGTCGAC AAGCTCGCCG ATTCCGCGCC CGGCTATATC GGCTCGGCGC GTCTCGATCC GGACGGTTAT GCGCTGCGCT TGGCACTGAC GCGCAAGCTC GCTGTCAATG CGATGGCGGC CGGAGAACGG CTGTTCGTCG ACCTGTTGCC GGAGAATTGG ACGGGCGCGC CGCCGGGACT GCCGCAAGAC GTCGTCAAGG AACTGGCCGA ACGTGCCCGC GCCGCCGAGC GCGCGCTGAA GGCCCAGCGT GCTACCGCCG AAGTGAAGAA GCGACCACCG ATCCGGGTGC GGACCTCGGT GCAGCCGACC TTCGTGCGCT ACGTCTTCGA AGTGCCGTCC GACGTGCGGG TGGCGTCGAC GCTGACCGAC CGCAAGCTGT CGGTGCAATT CAACACTCCG CTGACCTTCG ACCTCGCCGA CGCGCAGCTC GCCTCGCCGC CGAGTGTCGC TTCGATCGCG CAGAACATGG AAGGCGGCAA TTCCACCGTC GACTTCACGC TGATCGGCGG CGCTGATGTG CATTCGTTCC GCGAAGAGAA GAACTTCATC ATCGATGTCG GGTTCCAGCC GGGCGGCGCC GAGTCGGGCC AGACCATGGG GCCGCAGGCG CTGAAGCTGC CTGAGATCGG CAAGCTCGAT CCGAAGGCGC TGCAGGCGGA GATCCAGAAG CAGGAACCCA AGGCTGAGAA CGGCCACAAG CCAGACGCCA AGGATTCAGG CCACAAGGCA GACGCCAAGG AGGCCGATCA CAAGCCGGAG GCCAAGCCCG CGCCGGCTCC GGTGGAAGCC AAGACCATGA AGCCGGCGAC ACCGGCCGGC CCGCAGCCTG CACCTGCCGC TGCGCCGTCT CCGTCTGTGG CGGGCCCCTC GGCGACGCCG TCGCCGGCCG GTCCGCCTGC CAAAGGTGGC GAAGTCGCTG CCGCGCCAGC AGGGCCTGCT GCGCCCACCA TCGCACCGCC GCAGACCGCT CCGGCTGTGC CTCAGGCTCC CACGCCTCCG CCCGCAGCAG CCGCGAAGCC AGTCTCGAAC GAGGGACGGC CGGTCGAAGT CCGAATGAAC ACCGATGGGC TGCGCCTCAG CTTCGCATTT TCGGCTCCGA CGCCGGCGGC GCTGTTCCGG CGCGGCGACG TGTTGTGGCT GGTCCTCGAC AACACCGCAG CGTTTGATCT GTCGGCCATC CGCCGCGAGG GCAGTGCGGT GGTCAGCGAC GCCAGCCGCA TGCCGCTCGC CAACGGACAA GCAATTCGCA TCCGGCTCAG CCGCCCGCAG ATCGCGACGC TCACTGAAGA CGACGGTGCG GGCAAAGGCT GGACTGTGAC GCTTGCCGAC GCCGGCCGCG CGGCTTCGCA GCCGCTCTCC GCGGTACGCA ACATTGCCGA TCCGACACGC GCCAGCGTTT CGGTGTCGTT GCCTGCGTTG GGCCAAGTGC AAAAGCTGGC CGATCCCGAC GCCGGCGATA CGCTGACGGT GGTTACCGCG CTGCCGCCGC CGCGCGGCTT CATCAAGCGG CAGAACTTCG TCGAGTTCAA TCTGCTGGAA TCGATCCACG GCGTTGTTGT CGAGCTGAAG TCTGACGACG TCACCGTCGA GACCACCCCC GACGCCGTTC TGCTGACGCG GCCTGGTGGT CTGACGCTGT CCTCCGCCGC AGAGACCGGC GGTGATGCCG CGTCCGAGAA GCCGTTCTTC GATGTCCGGC AATGGGCCAA GGATCAGACT GGCAGCTTCA AGGACATGCT CGACGAGCGT CTCAATGCCG CGTCGGTTGC CGGCGGCGAC GACAAGCTGC CGGCGCGGCT TGATCTCGCG CGGTTCTACA TGGCGCGCGG CCTCTACCCC GAGGCCAAGG GCGTGCTTGA TCTCGCGCTG TCCGCCATCA AGCCCGGCCA GGAAGATGCC GCCACCATGC TCGGCCATGC GGCCGCGAGC GCGCTGATGC AGCGGCCGGA GCAGACGTTG AAGGACGTCG CTAACCCGGC GATTGCTTCG ACCTACGACG CGCAGATGTG GAAGGGCGTG GCGCTGGCGC GGCAAGGCAA ATGGGCCGAG GCGCGCGAGA AGCTGAAGAG CGTGCAGTTC GCCATCACGG CGCTGCCGCT CGATATCCAG CGTGCAGTGC TCGCCGCGGC GATGCGGGCC TCGCTCGAAG TGCGTGACTA TTCGGGCGCC GCCAAACTCA GCACCGATTT TGATCTGGTC GGCATCCCGC CGGAGATCAA GCCGCAGGTC GCAGTGATGC GCGGCTGGCT CGACGAAGCG CTGGGCCGCG AGCCGGAAGC GCTGAAGAAG TACAAGGACG CGATGGCTTC GTCCGACCGT CAGGCCGCCG CCGAAGCGCG GTTTCGCGAG ATCGTGCTGC GGCTGAAGCG CGAAGAATTG ACGCCTGCGG AAGCTCTGCC CGATCTGGAG CGACTGTCTG TGAACTGGCG CGGCGATCAG CTCGAAGTGA ACACTCAGCA ACTGCTGACC AAGATGTACG CCGACGCCGG CCGCTATCAG GATTCGCTGC AGGCGGCCCG GGTTGCGACC CAGCTTGCGC CGAATTCGGA AGCTGCCCGC AAGGCGCAGG ACGATGCCCG CGCGCTGTTC GCGCAGATCT TCCTTGGAAG CAAGGGCGAC GACTTGCCGC CGATCGAAGC GCTGGCGATG TTCTACGAGT ATCGCGAGCT GACGCCGATC GGCCGGCGCG GCGACGAGAT GATCCGCCGG CTTGCCGACC GTTTGGTTGC CGTCGATCTG CTCGATCAGG CCAGTGAGCT GTTGCAGTAC CAGGTTGACA AGCGTCTCGA AGGCGCGGCG CGCGCGCAGG TCGCCGCCAA GCTGGCGATG ATCTACCTGA TGAACCGCAA ACCGGATCGC GCCATCGGTG CGCTGCATTC CTCGCGCATC GCCGATCTCG CCGGTGAATT GCGTCAGCAG CGGCTGTTAC TCGAGGCGCG TGCGCAGAGC GACATCGGCC GCCACGATCT GGCGCTCGAC ATTATCAGCA ACATCAGTGG GCGCGAAGCG ATCCGGCTGC GCTCCGACAT CTACTGGGCG GCGCGGCGCT GGCGCGAATC CTCCGAGCAG ATTGAACTGT ATCTCGGCGA CCGCTGGAAG GACTTCACCC CGCTGTCGGC CGCCGAGAAG AGCGACGTGA TCCGCGCCGT AGTCGGCTAT GCGCTGGCCG AAGACGCACT CGGCCTCGAT CGCTTCCGCG AGAAATTTGC GCCGCTGATG ACCGATCCGG CCGATCGCGC GGCCTTCGAC ATTGCGAGCC AGCCGAGCGC CGGCAACAGC GCTGCGTTTG CCGCGATCGC CAAGATGGCC GCCGGCGTCG ATACGCTCGA AGGCTTCCTG CGCGAGATGA AGCAGCGCTT CCCCGACGCC AGCGCCCGCG CCAACCCGCC GCCGGGCGCC GATCTCACCG CCACCGGCAC GCTGCCCCAG GTGCCGCCAA AGATCCGCGC CATTCAGGCG ACGCGGTAG
|
Protein sequence | MARMAAAGVW SQALVRRVVR LCLAGLLLLI AAALTVAPAA AQVRGEASFE AKGGYGRLLL KMAEDVESDV ATAGLIVVIR FKRPIDIPVD KLADSAPGYI GSARLDPDGY ALRLALTRKL AVNAMAAGER LFVDLLPENW TGAPPGLPQD VVKELAERAR AAERALKAQR ATAEVKKRPP IRVRTSVQPT FVRYVFEVPS DVRVASTLTD RKLSVQFNTP LTFDLADAQL ASPPSVASIA QNMEGGNSTV DFTLIGGADV HSFREEKNFI IDVGFQPGGA ESGQTMGPQA LKLPEIGKLD PKALQAEIQK QEPKAENGHK PDAKDSGHKA DAKEADHKPE AKPAPAPVEA KTMKPATPAG PQPAPAAAPS PSVAGPSATP SPAGPPAKGG EVAAAPAGPA APTIAPPQTA PAVPQAPTPP PAAAAKPVSN EGRPVEVRMN TDGLRLSFAF SAPTPAALFR RGDVLWLVLD NTAAFDLSAI RREGSAVVSD ASRMPLANGQ AIRIRLSRPQ IATLTEDDGA GKGWTVTLAD AGRAASQPLS AVRNIADPTR ASVSVSLPAL GQVQKLADPD AGDTLTVVTA LPPPRGFIKR QNFVEFNLLE SIHGVVVELK SDDVTVETTP DAVLLTRPGG LTLSSAAETG GDAASEKPFF DVRQWAKDQT GSFKDMLDER LNAASVAGGD DKLPARLDLA RFYMARGLYP EAKGVLDLAL SAIKPGQEDA ATMLGHAAAS ALMQRPEQTL KDVANPAIAS TYDAQMWKGV ALARQGKWAE AREKLKSVQF AITALPLDIQ RAVLAAAMRA SLEVRDYSGA AKLSTDFDLV GIPPEIKPQV AVMRGWLDEA LGREPEALKK YKDAMASSDR QAAAEARFRE IVLRLKREEL TPAEALPDLE RLSVNWRGDQ LEVNTQQLLT KMYADAGRYQ DSLQAARVAT QLAPNSEAAR KAQDDARALF AQIFLGSKGD DLPPIEALAM FYEYRELTPI GRRGDEMIRR LADRLVAVDL LDQASELLQY QVDKRLEGAA RAQVAAKLAM IYLMNRKPDR AIGALHSSRI ADLAGELRQQ RLLLEARAQS DIGRHDLALD IISNISGREA IRLRSDIYWA ARRWRESSEQ IELYLGDRWK DFTPLSAAEK SDVIRAVVGY ALAEDALGLD RFREKFAPLM TDPADRAAFD IASQPSAGNS AAFAAIAKMA AGVDTLEGFL REMKQRFPDA SARANPPPGA DLTATGTLPQ VPPKIRAIQA TR
|
| |