Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3828 |
Symbol | |
ID | 6411506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4112488 |
End bp | 4113708 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642713709 |
Product | inner-membrane translocator |
Protein accession | YP_001992802 |
Protein GI | 192292197 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.898001 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCACA CGTCCAAATT CGCCGATATG GCGCTGTTCC TCGGTTTTGC CGGTGTGGTG GCACTCGGGC CGGTCATCTT CACCCCGATC GGCGCCGGCT ATCCGGACCT GCTGCAGAAG TTCGCGATCT ACGGCATCTT CGCGATCGGT TTCAACATCC TGTTCGGCCT CACCGGCTAT CTCTCGTTCG GGCACGCGGC GTTTCTCGGC GTCGGTTCTT ATGCGGCGGT GTGGTCGTTC AAGCTGGTGT CCATGGACCT GCTGCCGGCG GTGGCGTTCT CTGTCTTCCT CGCAGGCCTG TTGGCGCTGG CGATCGGTTT CATCAGCCTG CGCCGTTCGG GCATCTACTT CTCGATCCTG ACGCTGGCCT TTGCGCAGAT GTGCTACAAC ATGGCGTATT CGGTTCTGAC GCCGATCACC AATGGTGAAA CCGGCCTGCG GGTGCTGCGC AACGATCCGC GTTACCTCGA CGCAGCGTTC GGCTACGTGT CGCCGATGCC GTCGCTGCTC GGGCTCCAGA TCACCAGCTG GACCGGATTC TACATTTGCG GCGCGGCGCT GGTAGCGGCA TTCGGCCTGT CGATCGCGAT CTTCCGCTCG CCGTTCGGGA TGACGCTGCG CGCCATCAAA TCGAACCAGA ATCGCATGGG CTACACCGGG TATCACAGCA GGCCGTATCT GCTCTCCGCC TTCGTGATCT CCGGCATGTT CGCCGGCTTG GCTGGCGCCC TGTTGGCCGC GACCGATCCC CTGGCGGGCG CTGAACGAAT GCAGTGGACC GCGTCCGGAG AGGTCGTGCT GATGACCGTT CTCGGCGGCG CCGGCACGCT TCTCGGTCCG GTGCTGGGCA CCGGCCTGAT CAAATATTTC GAGAACATCT TTTCCGCCTA CAACGAGCAG CAGCTTACGG CCGTGTTCTC CTTCGAGCCG GATAGCCTGC GCGAGGGGCT GGTCAAGACG CTCAGCCTGT TCGTCGGCGA GGGCTGGCAG CTCACCCTTG GTCTACTCTT CATGGCGGTG GTGATATTCC TGCCCGGCGG TATCATGGAA GGCGTCAACC GCCTGATCGG GCTCAAGCGC ACGCCGAGGG TCAAATCGCT CGGCGATTCG CCGCAGCGCG ACGGCCTCGG CGAAAGCGTG ATCGAGAACA TGCCGGCGAG CTACGGCGCA GCTCAGGCCG AACAGAAATC CGTCAAGAAA GCAAAGGCCG CTGCACCATG A
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Protein sequence | MKHTSKFADM ALFLGFAGVV ALGPVIFTPI GAGYPDLLQK FAIYGIFAIG FNILFGLTGY LSFGHAAFLG VGSYAAVWSF KLVSMDLLPA VAFSVFLAGL LALAIGFISL RRSGIYFSIL TLAFAQMCYN MAYSVLTPIT NGETGLRVLR NDPRYLDAAF GYVSPMPSLL GLQITSWTGF YICGAALVAA FGLSIAIFRS PFGMTLRAIK SNQNRMGYTG YHSRPYLLSA FVISGMFAGL AGALLAATDP LAGAERMQWT ASGEVVLMTV LGGAGTLLGP VLGTGLIKYF ENIFSAYNEQ QLTAVFSFEP DSLREGLVKT LSLFVGEGWQ LTLGLLFMAV VIFLPGGIME GVNRLIGLKR TPRVKSLGDS PQRDGLGESV IENMPASYGA AQAEQKSVKK AKAAAP
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