| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0748 |
|---|
| Symbol | |
|---|
| ID | 6408401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 789992 |
|---|
| End bp | 791023 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642710663 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001989783 |
|---|
| Protein GI | 192289178 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0153902 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCT TCCACCCGAC CCGCCGTGGT GTCCGGCTGT TCAGCGCCCT GTGTCTCGGA
GCCGGCATTT TGGCCGGTCC GCTTCCGGCT CACGCCGACG ACAAATTCGA CAAGCTGATC
CAGAAGCTGA TGCCGAAGCG GTTGCCCGAG GGCTTCGCCT CGGCCAACGG CCGGCTTGAA
TCCGAACAGG TCGAGATCGC CACCAAGCTG GCGGGCCGGA TCGCCGAAGT TCTGGTGAAG
GAGGGCGACG AAGTCGAGAA GGGCCAGCTT CTGGTGAAGA TGGACGTCTC CGACATTCAG
GCTCAGCTCC TTGCCGCCGA AGCGCAGGAG CGCCGCGCCG TGCAGAGCAA GGCGGTGGCT
GAAGCGATGG TGCTGCAGCG GGAGAGTGAG CAGAAGCTCG CCGCTCAACA GCTAGGCCGC
GCCGAAGCAC TGTTCGAAAA AGGCTTCTCC ACCGCGGAAA TCCGTGACCA GCGTCAGGCT
GCGCAGAACG TCGCCGACGC GGCGCTGATT GCCGCGAAGG CGAGCCTCAG TGACGCCACC
GCTGCGATCG ATGCCGCCCG CGCCGAAGTC GCGCGGATCA AGACAGTGCT GGACGACATG
CAGCTGAAGG CACCGCGCCG CGGCCGCATT CAGTACAAGC TGGCGCAGGC CGGCGAAGTG
CTCGGCGCCG GCTCCCGCGT GCTGACGCTG GTCGATCTCA CCGATGTCTA CATGACCGTG
TTTGTGCCGG CGAGCGTCGC TGCCGCATTG GCTTACGGCT CGGACGCCCG GCTGATCCTC
GACGCGATCC CGCAATATGT CGTGCCGGCG AAGGTCACCT TCGTGGCCAG CGAGGCGCAG
TTCACGCCCA AGGCGGTCGA AACCAAGGAC GAGCGCGAGA AGCTGATGTT CCGCGTCAAG
CTGACGCTGC CGCCGGACCT GCTACGCAAA TACGAGCGTG AGGTGAAGAC CGGCGTGCGC
GGGATGGCGT ATTTGCGCAC GGACAGCGAC AAGCAATGGC CGGATAATCT CAAGGTCAAG
CTGCCGCAAT GA
|
|---|
| Protein sequence | MTIFHPTRRG VRLFSALCLG AGILAGPLPA HADDKFDKLI QKLMPKRLPE GFASANGRLE
SEQVEIATKL AGRIAEVLVK EGDEVEKGQL LVKMDVSDIQ AQLLAAEAQE RRAVQSKAVA
EAMVLQRESE QKLAAQQLGR AEALFEKGFS TAEIRDQRQA AQNVADAALI AAKASLSDAT
AAIDAARAEV ARIKTVLDDM QLKAPRRGRI QYKLAQAGEV LGAGSRVLTL VDLTDVYMTV
FVPASVAAAL AYGSDARLIL DAIPQYVVPA KVTFVASEAQ FTPKAVETKD EREKLMFRVK
LTLPPDLLRK YEREVKTGVR GMAYLRTDSD KQWPDNLKVK LPQ
|
|---|
| |