| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0543 |
|---|
| Symbol | |
|---|
| ID | 6408193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 594742 |
|---|
| End bp | 595794 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710456 |
|---|
| Product | membrane protein AbrB duplication |
|---|
| Protein accession | YP_001989578 |
|---|
| Protein GI | 192288973 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3180] Putative ammonia monooxygenase |
|---|
| TIGRFAM ID | [TIGR03082] membrane protein AbrB duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGC GGTCCAAGAC TCTCCAGGTG ATCGAAACGA TCGCCATCGG CTCTGCCGGC
GGCGCATTGT TCTATTGGGC CCAGCTCCCC GGCGGACTGA TCACGGGCGC GATGATCGCG
GTCGGCGCCG CCGGCCTTGC CGGACGCAAG ATGGGCCTGC CGCCGCCGCT GTCGCATATC
GTGCTGATGG CGCTCGGCGT CTCGCTGGGC TCGGTGGTGT CGCCCACCAT GGTGCACAAT
CTAGCGTCCT ATCCGGTGAC GATCGGGCTG CTCGCGGTGG CGACGTTCTG CGCCACCTTC
GGCAGCAGCA TCTATCTGCA GCGCGTCCAT GGCTGGGACC GGACGTCGGC ATTGCTGGCC
GGCAGTCCCG GCGCGCTGTC GCAGATCATC ATGCTGGCCA CCGAACGCAA AGCGGATGTG
CCCGGCATCG CCGTCGTTCA AGTCATGCGT GTGATCATCC TGACCAGCGC AGTACCGATG
CTGCTGGCGC TGATCGGCAT GGCGGGTCAC GGGGCGCTGC CGTCCCGCGG ACCGGAGGCG
ACACCGCTCG TCCTGGCGGT CCTGATCGCT GTCGCGGTCG GTGTCGCGCT GCTGCTGCGG
CTGGTGAACT TCCCGGCAAG CTGGATGTTC GGTGCGATGC TCGGCTCGTC GGTGCTGCAC
GGCGGCGGTT GGGTGGAAGG CACGCTGCCG CAATGGGCCT ACCTCGCCGC ACTGGTCGGA
ATCGGCACCC TGATCGGCGC TCGGTTCGGC GCCATCAAGC CGCGCACCAT CCTGAGCTAT
ATCGGAGCGG CACTCGGCTC GTTCGCGGTC GCAATCGCGA TCTCGGCGGT GTTCGTCATC
GCCATCATGC TGACCACGCC GGTCAAGTTG AACGACCTGG TGGTGGCGTT TTCACCCGGT
GCGATGGACG CCATGATGGC GCTGGCGCTG ACCCTGCACA TCGATCCGGT GTTTGTCGGC
GCGCACCATC TGTCGCGCTT CATCTACGTC TCGATCGTGA CGCCAGGGAT CGTGCATTTG
TTCGGGCACA GCCCGGACGA CGTCGACGAC TGA
|
|---|
| Protein sequence | MTLRSKTLQV IETIAIGSAG GALFYWAQLP GGLITGAMIA VGAAGLAGRK MGLPPPLSHI
VLMALGVSLG SVVSPTMVHN LASYPVTIGL LAVATFCATF GSSIYLQRVH GWDRTSALLA
GSPGALSQII MLATERKADV PGIAVVQVMR VIILTSAVPM LLALIGMAGH GALPSRGPEA
TPLVLAVLIA VAVGVALLLR LVNFPASWMF GAMLGSSVLH GGGWVEGTLP QWAYLAALVG
IGTLIGARFG AIKPRTILSY IGAALGSFAV AIAISAVFVI AIMLTTPVKL NDLVVAFSPG
AMDAMMALAL TLHIDPVFVG AHHLSRFIYV SIVTPGIVHL FGHSPDDVDD
|
|---|
| |