| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2193 |
|---|
| Symbol | |
|---|
| ID | 5209156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2701436 |
|---|
| End bp | 2702689 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640595795 |
|---|
| Product | nuclease SbcCD, D subunit |
|---|
| Protein accession | YP_001276523 |
|---|
| Protein GI | 148656318 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0979065 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.337885 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGC TCCATCTCGC GGATCTGCAC ATCGGCATCG AGAATTATGG GCGCGTCGAT
CCGGCGACCG GATTGCACAG CCGCCTGCGC GACTATCTGG AACGCCTGGA TGAGGCGATC
GATATCGGGC TTGATGCGGG GGTCGATGCG GTTCTGATCG CGGGGGATGT CTACAAAAAC
CGCACCCCCA ATCCCACGCA GCAGCGCGAG TTTGCCCGGC GCATCCATCG CCTGCGCGCG
CTTGGGTTGC CGGTGCTCAT TCTCACCGGC AATCACGATG TATCGCCAGC AGCCGGGCGC
GCCCACGCAG TCGAAATCTT TGACACGCTG GCGGTCGATG GGGTGACCAT CGCCGATAGA
CCGCGCATCC ACACCCTGCA CACCCGATCC GGTCCGCTTC AGGTGATTGC GCTGCCCTGG
GTGACGCGCC ACGCGCTGCT GACCAGGGAG GAATTGCGCA TGGCATCGTT TCTGGAGGTC
GAAACGATGC TGATCGAGCG GGTGGAACGA TTTTTGCGCC AGGCGGCCGA CGATGTCGAT
CCGACCCTGC CGACCGTGTT GACCGTCCAT GGGACTATCG ACGGCGCGAC GTTCGGCGCA
GAGCGGCAGG TGTTGCTGGG ACGCGATCTG GTGTATCCGC GCAGCCTGGT GGCGCTGCCG
AATGTCGATT ATGTCGCCAT GGGGCACATC CATCGTCATC AGGCGCTCGG CGACCATCCG
CCGATTGTGT ATCCCGGCAG CATCGAGCGC ATCGATTTTG GGGAAGAGGG GGAAGACAAG
GGATGCATTA TCGTCGATCT GGGCGCGAAG GGTGAGACGC AGTGGCGCTT CCACAAATTG
TCGGCGCGCC CGTTTGTCAC GATTGCGGTC GACGTGCGTG GCGTGAGCGA CCCGATGGAA
CCGGTGTTGA GCGCGATTGG ACGACGTTCG CTGCGCGGCG CGGTGGTGCG GCTGAAGATC
GAGGCGCGTC CCGAACAGGA AGGCATGGTG CGAACGGAAG CGATCCGGCA GGCGATTGAG
GAGGCAGGCG CATCGTTTGT CGCGGCCGTA GCGGTTGAAG TTGAACGCAG TGCGCGCGGA
CGCCTGGCGC GTGACGATAC GAGCGTGCTC GATGGATTGA CGCCGCGCCG CGCGCTGGAG
TTGTACCTGC GCCAGAAGAC GCCCCCGCTT GCCGAAGAGC GAATTGCCGC GCTCCTCGCT
GCCGCCGATG AACTGTTGAA TGAGGGGGAC GGGATGGGTG TTCAGAGTCA GTAA
|
|---|
| Protein sequence | MRLLHLADLH IGIENYGRVD PATGLHSRLR DYLERLDEAI DIGLDAGVDA VLIAGDVYKN
RTPNPTQQRE FARRIHRLRA LGLPVLILTG NHDVSPAAGR AHAVEIFDTL AVDGVTIADR
PRIHTLHTRS GPLQVIALPW VTRHALLTRE ELRMASFLEV ETMLIERVER FLRQAADDVD
PTLPTVLTVH GTIDGATFGA ERQVLLGRDL VYPRSLVALP NVDYVAMGHI HRHQALGDHP
PIVYPGSIER IDFGEEGEDK GCIIVDLGAK GETQWRFHKL SARPFVTIAV DVRGVSDPME
PVLSAIGRRS LRGAVVRLKI EARPEQEGMV RTEAIRQAIE EAGASFVAAV AVEVERSARG
RLARDDTSVL DGLTPRRALE LYLRQKTPPL AEERIAALLA AADELLNEGD GMGVQSQ
|
|---|
| |