| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1485 |
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| Symbol | |
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| ID | 5208440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 1808136 |
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| End bp | 1811825 |
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| Gene Length | 3690 bp |
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| Protein Length | 1229 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640595094 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001275830 |
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| Protein GI | 148655625 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACCTGA GCCGCATAAC TGGCGCGCCG GTGATGGAGT TTCATGTCGC CCGCAGCGCG
CGCGACCGCT ACCACTTCGA TGAGTCGTTG TTCCAGTTCA GCGGCAACGT CATCTTTGCC
AACTTCCACG CCGCGCGTGT CTTCGCTCAG AAGATGAACC AGAAGCGTGA CCTGGCGCGT
TTCCCTGAGC AGGCGGTGCG CGCCGGGCAG ATCAGCGCAA TGGGGTTGCT CGACGAAATT
CTGCATTATG TCGCGCAACT CTACCGCCAG CGCGTGAAGG AGCGTCTGCT CGCCGATGCG
CTCACCTGGC TCAACGAACG CCTGGGCGCA GAAAAGGTCG AGACGGCGCT GCGCGCCTTC
AGCGATGAGT TCCCGCCAAT TGCCGTGTAC CGTCGTGAAC AGACCATCGA AGCGTACCTC
GAAGGATCGA CCGCCAGCAC GCCACACCGC GAAGTTGCGC TCGAAGAGAT GCTCATGCTC
TGGCTGGAAA ACATGAATCC GGCCTTCAAT CCTTTCCTCG AACTGTTCGA TGACTCTCGA
CTGAAGCACG ATACCGTCTA TCTCAAGATC ATCGAAGAAC TCGACCGCTT CTTCGAAACC
CAACCGCCGC CAGCCGCCGT TCTGCCCGGC GTCTCCAGTC GCACCCTGAT CGAACTTCTG
CGCGCCCCCG CGCTGGCGTC ACCCTACTCG ATCGAAGGGC AACTCAACTA TGTGCTTGAA
CACTGGGCGG GCTTCCTGGA TCGCGCATTT CTCTACCGCC TGCTCAGCAG CCTGGACGTT
ATTAAAGAAG AGGAACGGGC GCGCTTCGGC GTCGGCGGCG GCGATCTGAC CGGTGCATAT
GTACCGGTTG CCGACTATCG CTATCTGGAG GCGGAACCGG AGCGCTATAC CCCCGACCGT
GAGTGGATGC CACGCCTGGT GCTGCTGGCA AAGAATACCT TCGTCTGGCT CGATCAGTTG
AGCAAATGGT ACGGTCGTCC GATCAAGACG CTCGACCAGG TGCCAGACGA GGAACTCGAT
ACGATGGCGC GCCGTGGGTT CACCGGTCTG TGGCTGATCG GTCTCTGGGA GCGCAGCCAG
GCGTCGAAAC GCATCAAGCA GATCATGGGC AACCCCGATG CCGTCGCCTC CGCCTATTCG
CTCTACGACT ACCAGATTGC TGCGGCGCTC GGCGGTCAAC CGGCGCTCGA CAATCTGCGG
GCGCGCGCCT GGCAGCGCGG CATTCGTCTC TCCGCCGATA TGGTGCCGAA CCACGTCGGC
ATCGACGGGC GCTGGGTGAT CGAGCATCCT GACTGGTTCA TTCAACTCGA TTATCCGCCC
TTTCCAACCT ACACCTTCAA CGGTCCCGAC CTGTCGAGTG ATGAGCGGGT GGGCATTTTC
ATCGAAGATC ACTACTACGA CCGCAGCGAT GCGGCGGTGG TCTTCAAGCG CCTCGACCGC
TGGACGGGAC AGGCGCGCTA CATTTACCAC GGGAACGACG GCACCAGCAT GCCGTGGAAC
GATACGGCGC AACTCAACTA CCTCAAGCCT GAAGTGCGTG AGGCAGTGAT TCAGACGATC
CTGCACGTGG CGCGGCAGTT CCCGATCATT CGCTTCGACG CGGCAATGAC GCTGACCAAA
CGCCACTATC ACCGTCTCTG GTTCCCCGAA CCGGGAACCG GCGGCGATAT TCCATCGCGC
GCCGGCTTTG GCATGACGCG CGCTCAGTTC GACGCGGTGA TGCCGGAGGA GTTCTGGCGC
GAGGTTGTTG ACCGCTGCGC GGTCGAAGCG CCTGATACGC TGCTGCTGGC AGAAGCCTTC
TGGTTGATGG AAGGGTACTT CGTGCGCACC CTCGGCATGC ATCGCGTGTA CAACAGTGCG
TTCATGGTCT GTCTGCGCGA TGAGGAGAAC GCCAAGTATC GCCAGATTAT GAAGAATGTG
CTCGAGTTCG ACCCGGAAGT GCTGCGCCGC TTCGTCAACT TTATGAATAA CCCCGACGAG
CGCACCGCGG TCGATCAGTT TGGCAAAGGT GATAAATACT TCGGCGTCTG CACCATGCTG
GTCACCATGC CAGGGTTGCC GATGTTTGGG CACGGGCAGA TCGAGGGGTT TGCCGAAAAG
TATGGCATGG AGTATTACCG CGCCTATTGG GACGAGAAGC CGGATGAGTG GCTGATTGCG
CGGCACGAGC GCGAAATCTT CCCGCTGCTC CACCGCCGTC ACCTGTTCGC CGGCACCGAC
CATTTCTTGC TGTACGACTT CTATATGCCT GACGGACATG TGAACGAGGA TGTGTTTGCG
TTCTCGAACC GCTATGGCAA TGAACGCGCG CTGGTGGTCT ACCATAATCG CTATGCCCAC
ACAAGCGGTT GGGTGCGCCT TTCGGCAGCG TTCATGGCGC GCACCGGCAA AGGCGATGAA
CGAACTCTGA CGCAACGCAC CCTCGCCGAA GGGCTGGCGC TCCGCGCTGG CGACAACAAT
TACACCATCT TCCGCGATCA CCGCAACGGG CTGGAATATA TTCGCCATAG CCGCGACCTG
GCGGAACGCG GGTTGTATGT CGAACTCGGT CCGTATGGCT GCCACGTGTT CCTCGATTTC
CGCGAAGTTA CCGAGTATCC AGACGGACGC TACGCTCAGA TTACGGCATA CCTGGGCGGG
CGCGGCGTAC CCAGCATCGA TATCGCCCTG CGCGAGATGT TCCTCCAACC GGTGCTGACC
CCCTTCCGCG AACTGGTCAG CGCTGCAACG CTGCGCGAAC TGGCAGCCTG GGCGGATCGC
CGCGCTGTGC AGCGCGGAGT CCTGCCAGCG TTCGACGGCG CGGACAATGA CAGGATCGAT
AGCATGCTGG AAGGACCCGA TGCGTTCGAC GAACCAACAC CCGAAGAACT CCAGGCGCTC
GCACAACGCC GGTCAACCCC CGAAAGCGCG GTTGCGCCAT CGACTCCTGT TCCAACCACG
CCGGAACAGA CTGAAACCGC TGCCATCGAA CGCTTCGAGC AGCATCTGCG AACCTTCCTC
ACTGAATTTG CCGCCTTCAC CGGGAGCACG GTCGATACCA ACCGCATCGT CACCGATGTG
GTGCATCGCC TGGAAACGAT GATCGATCTC ATGGTCTGCG CCGATGAACA TCAGGCGCAG
CGTATTGGCG CACCGCTGGC GGACGATCCG GCGCGCTGGG GAACCGCCAT CGCCTGGGCA
ACGCTCCATC GACTGGGTCT CATGGTTGCC GCCGATGATA TTGCCGGACA GAGCCGAAGC
CTGATCGACG AATACCTGCT CGGGCGCGCG CTCCAGGCGG CGCTGGTCGA GTTCGGCTAC
AGCGACGACA CAGCCGCCGA TGCGGCGCTG CTGGTCAAGA TTCTGACCAC CCGGCAGCGC
TGGCACGCGA CATTCGCCGA CGAGTACCAC GCCCTCGCAT CAGCATTGAT GTCGGACGGC
GATGTTCAGT TGTTCACACG GGTCAACCGC TTCCAGGGCG TGCTATGGTT CAACAAAGAG
CGATTCGAAC GGCTCCTGCG CTGGCTGGAC CTGATCGCCG TCGCAACGTT ACAGGTGGAA
GCAACGCCCG ACGCCGATGC GATCCGCGCC GATTGCGCCC AGACCATCGA ACGCCTGATC
GACGCGGCTG AACAGAGCGG CTACCGGGTC GAACAGTTGC TTGCAGTGTC GCAGAGCGAG
GAGTCATTGA CAGATACAGG AGCAGAGTGA
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| Protein sequence | MDLSRITGAP VMEFHVARSA RDRYHFDESL FQFSGNVIFA NFHAARVFAQ KMNQKRDLAR
FPEQAVRAGQ ISAMGLLDEI LHYVAQLYRQ RVKERLLADA LTWLNERLGA EKVETALRAF
SDEFPPIAVY RREQTIEAYL EGSTASTPHR EVALEEMLML WLENMNPAFN PFLELFDDSR
LKHDTVYLKI IEELDRFFET QPPPAAVLPG VSSRTLIELL RAPALASPYS IEGQLNYVLE
HWAGFLDRAF LYRLLSSLDV IKEEERARFG VGGGDLTGAY VPVADYRYLE AEPERYTPDR
EWMPRLVLLA KNTFVWLDQL SKWYGRPIKT LDQVPDEELD TMARRGFTGL WLIGLWERSQ
ASKRIKQIMG NPDAVASAYS LYDYQIAAAL GGQPALDNLR ARAWQRGIRL SADMVPNHVG
IDGRWVIEHP DWFIQLDYPP FPTYTFNGPD LSSDERVGIF IEDHYYDRSD AAVVFKRLDR
WTGQARYIYH GNDGTSMPWN DTAQLNYLKP EVREAVIQTI LHVARQFPII RFDAAMTLTK
RHYHRLWFPE PGTGGDIPSR AGFGMTRAQF DAVMPEEFWR EVVDRCAVEA PDTLLLAEAF
WLMEGYFVRT LGMHRVYNSA FMVCLRDEEN AKYRQIMKNV LEFDPEVLRR FVNFMNNPDE
RTAVDQFGKG DKYFGVCTML VTMPGLPMFG HGQIEGFAEK YGMEYYRAYW DEKPDEWLIA
RHEREIFPLL HRRHLFAGTD HFLLYDFYMP DGHVNEDVFA FSNRYGNERA LVVYHNRYAH
TSGWVRLSAA FMARTGKGDE RTLTQRTLAE GLALRAGDNN YTIFRDHRNG LEYIRHSRDL
AERGLYVELG PYGCHVFLDF REVTEYPDGR YAQITAYLGG RGVPSIDIAL REMFLQPVLT
PFRELVSAAT LRELAAWADR RAVQRGVLPA FDGADNDRID SMLEGPDAFD EPTPEELQAL
AQRRSTPESA VAPSTPVPTT PEQTETAAIE RFEQHLRTFL TEFAAFTGST VDTNRIVTDV
VHRLETMIDL MVCADEHQAQ RIGAPLADDP ARWGTAIAWA TLHRLGLMVA ADDIAGQSRS
LIDEYLLGRA LQAALVEFGY SDDTAADAAL LVKILTTRQR WHATFADEYH ALASALMSDG
DVQLFTRVNR FQGVLWFNKE RFERLLRWLD LIAVATLQVE ATPDADAIRA DCAQTIERLI
DAAEQSGYRV EQLLAVSQSE ESLTDTGAE
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