| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5581 |
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| Symbol | |
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| ID | 4042445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 2334495 |
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| End bp | 2336141 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637981000 |
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| Product | diguanylate cyclase (GGDEF) domain-containing protein |
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| Protein accession | YP_587709 |
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| Protein GI | 94314500 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCGCC CCGCACAGCC AGTCGGGGCC CCGATCTGGT TCGGCCGACC TTCCATGCCA
TCGTATCCTC TCGTCCTTTG TCTGACCATC GCCGTGGTGT GCAGCGTGGG CATGGCCATT
GCCGCCTGGC CGCGCCGTGA CGACCCTACG GTCAGGGCGT TCCTGCTGCT GGCCGGGGGC
GTGGTGGTCT GGAGCGGCGG ACGGTTGCTC GAGATCAGCG AATCGGACAT GGCCGGGCGC
ATCTTCTGGG CGAAGCTCCA GTACCTCGGC ATCGTGGCCG TGCCAATTGG CTGGCTCGTG
GCGATGATCC ATGTCAGCCG GCCGCATTTC GTGGTGCCCT GGTCGAAGCT ATGGGTGCCC
GTGATGGCGG CGGTCCTGTC GGTCGTGCTC GTGTTCACCA ATGAGCGTCA CCATCTGGTC
TGGACCTCGA TCGAACTGAT GCCCCCCGGT GTATCACCCG GTGCCGTATT CCACCACGGT
ATCGGCTACA CGATCATGGC GGCGTGGACC TATGCGCTGC TCGGACTGAG CCTGTACTTC
CTCATCACGG CCAAGGTGCC GAACGCGGCG TTGTCGGTGC GCGGGCGGAA TATCCTGGCG
TGCGGCCTGG CGCTGCCGCT TGTTTTTCAT CTCGCCTATC TGGAGCGCCT GACTGGCCCG
CTCGGCGGTG ATCTTACACC GGCCACGTTC TCGGTCATGA CGGTGCTGGT CTGGTTCTGT
GCGCTGCGAT CGCATCTGGA CGATGTCGGG CACTACGCGC GGCTGCGTGT ATTCGACACC
ATCCGCGAAG GCTGCGTGAT CCTCGGCCTG GACGGCACCA TCGTCGAGTT CAACCCCGCA
GCGGCGCGCA TGTTGCCGGA ACTGGCGCAA GGCGAGGTGG CGCCTGCCAC GTGGCAGGAC
TTGCTGTCTT CGCCGGCCAC TGCCGAAGAC GTCGGCACGA ATCCCGGGAT TCCCCAGGGC
GCGCAGTACG AACTGATGGT GGAGCCCGTC TGCCGGATGG ATGGCAAGCC AATCGGCAAG
CTCGTGTTCA TGCGCGATAT CAGCCGCTAT CAGTCGCGCG AGCAGGCGCT GGCCATGCAG
CTTGGGCAGA CCGCGCAGGA GCTGTCGCGC GCCCAGGCGG ACCTCGACGT CGATGCCCTG
ACCGGCATTC CGAATCGTCG CTACTTCCAG CGCGAGTCGC ATGCCGCGGT GACACGCGCC
TACGAACGCG GCACGGAAAT CGGCCTGCTG ATTCTGGATG TCGACCTGTT CAAGCAGTTC
AACGATCTCT ATGGCCATCC GCGCGGCGAC GAGTGCCTGC GGCAGGTCGC GACGGCCTTG
ACCTGCGTGC TCGATGGCAC GCAGTTTTGC GCCCGCCTGG GTGGCGAGGA GTTTGCCGTG
GTGCTGCCGG ATTCCACGTC CGAGGAGACG CGAACCATCG CACGCCGGAT GGTGGCAGCG
GTACGCGAAC TGGGCATTCC CCATCATGGC ACGCCGGTGC AGCCGTTCGT GACGATCAGC
GTCGGCGCGG TCTGCGCCGT GCCCGACGCG CCGCGCCTCG AGCCACTGCT GCATCGCGCC
GACAGCGCCA TGTACCGCGC CAAGCGGGCG GGCCGGAACC GCTACGTGGT CGATGGCGGG
CTCTATCTGG AGCTGCGCGG CAACTGA
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| Protein sequence | MVRPAQPVGA PIWFGRPSMP SYPLVLCLTI AVVCSVGMAI AAWPRRDDPT VRAFLLLAGG
VVVWSGGRLL EISESDMAGR IFWAKLQYLG IVAVPIGWLV AMIHVSRPHF VVPWSKLWVP
VMAAVLSVVL VFTNERHHLV WTSIELMPPG VSPGAVFHHG IGYTIMAAWT YALLGLSLYF
LITAKVPNAA LSVRGRNILA CGLALPLVFH LAYLERLTGP LGGDLTPATF SVMTVLVWFC
ALRSHLDDVG HYARLRVFDT IREGCVILGL DGTIVEFNPA AARMLPELAQ GEVAPATWQD
LLSSPATAED VGTNPGIPQG AQYELMVEPV CRMDGKPIGK LVFMRDISRY QSREQALAMQ
LGQTAQELSR AQADLDVDAL TGIPNRRYFQ RESHAAVTRA YERGTEIGLL ILDVDLFKQF
NDLYGHPRGD ECLRQVATAL TCVLDGTQFC ARLGGEEFAV VLPDSTSEET RTIARRMVAA
VRELGIPHHG TPVQPFVTIS VGAVCAVPDA PRLEPLLHRA DSAMYRAKRA GRNRYVVDGG
LYLELRGN
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