14 homologs were found in PanDaTox collection
for query gene Rmet_1276 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_1276  hypothetical protein  100 
 
 
111 aa  215  2e-55  Cupriavidus metallidurans CH34  Bacteria  normal  0.117494  normal  0.0907149 
 
 
-
 
NC_011662  Tmz1t_1005  hypothetical protein  40.74 
 
 
105 aa  70.9  0.000000000006  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1618  hypothetical protein  40.74 
 
 
105 aa  70.9  0.000000000006  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2649  hypothetical protein  31.76 
 
 
96 aa  45.1  0.0003  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_4033  Cobyrinic acid ac-diamide synthase  48.84 
 
 
85 aa  44.7  0.0004  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0268  hypothetical protein  30.56 
 
 
110 aa  43.9  0.0008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.38737  normal 
 
 
-
 
NC_011206  Lferr_1754  hypothetical protein  30.56 
 
 
110 aa  43.9  0.0008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.695573 
 
 
-
 
NC_011206  Lferr_2091  hypothetical protein  30.56 
 
 
110 aa  43.9  0.0008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2468  ISAfe4, tranposase orf1  30.56 
 
 
110 aa  43.9  0.0008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.191238  n/a   
 
 
-
 
NC_011761  AFE_2939  ISAfe4, tranposase orf1  30.56 
 
 
110 aa  43.9  0.0008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0110875  n/a   
 
 
-
 
NC_011206  Lferr_1328  conserved hypothetical protein, possibly transposase  30.56 
 
 
110 aa  43.1  0.001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0265671 
 
 
-
 
NC_011761  AFE_1709  ISAfe4, tranposase orf1  30.56 
 
 
110 aa  43.1  0.001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2622  hypothetical protein  30.59 
 
 
116 aa  42.7  0.002  Magnetococcus sp. MC-1  Bacteria  normal  0.0262298  normal 
 
 
-
 
NC_008576  Mmc1_2652  hypothetical protein  30.59 
 
 
116 aa  42.7  0.002  Magnetococcus sp. MC-1  Bacteria  normal  0.117038  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>