| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4246 |
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| Symbol | |
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| ID | 3959995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007901 |
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| Strand | - |
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| Start bp | 1 |
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| End bp | 1791 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637909454 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_515931 |
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| Protein GI | 89885733 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACTTT TAGATGTATT CAAGCGGACG TCAACTCGCG CTACGCTGGT GGCCCGCGGG
CCCTCTGGTG GGGCATTACG TGATCGTGCG GCGTCAGCGC CAGCATCGTT TGCAACGACG
GGCCATGGTA CGGGCCAGAA ACAGGGGCAG TCTGCACGGG TTGGGGTGAT CCAGGACCAG
GTGGATTTGC CTCTCTACAG GGAATTAGCT CCGATTCCGG CGAATGCCAA AGATTTCGCG
GCGCTCTTGG TATCCCTTGA TGGAAGGACG GTCTATTTGG CTGTGCTGCC TGAGATGGCA
ACACGGGCCA TCACACACAC GATCAAGCAA TCGTTGAGTC ACAGCGGCTC CTACGACAAC
GTGAAGATGA TCGAGGTGAC CACAAACGTG TTGCACGCTC TGCACGCCGC CAGATCTATC
GGTCGCCTAG ACACCCAGGA GGTCGCGGGC GAGGCGAAGG GTTTGAATAT CCGCATGGGC
TTCGAGCTCA TTGCAACTGG CATCGAAATG GAAGCCAGTG ACATTCACAT TGACATTCGC
AATACTGGGC GCGATGCACC GATGGTGTTG GTGCGCTTAA GAATCCACGG TGCGCTGGAG
GAACATGCCT GTTTGCGTAC CGCAGAGGCC GTCCAAGTCT ATACAGAAAT GGTTCGCGGC
CTATATCAGA ACGACACGAT ATCAAACGCG CTGGTGCGTA CGAGCGGTAC TTTCAACGAG
TTGGATCGGC AAGAGGCAAT GCTGAAGCCT CCAATCAAGA ACGCCGAGTT GCGTTTCGAA
TCGTTACCGG AAAAAGGCGG CTTTGACGTT GTTATGCGCA TTAACGGGCA CGACGGCAAA
TCGGCAGCCC GCAAGAGCCT TGACCAACTT GGTTTGAGTG ACGATCACAC GCGAGACCTA
ACTCGCGCGT CGCAAGCGCC CCATGGATTG GTGGTAGTTG TGGGGTCAAC GGGCTCGGGC
AAGACGACCA CGATTACAAC GATCTTGGCA ATGGACCCCT CGGCCAAGTA CAAAAAGCGG
ATTTCATTGG AAATTCCACC CGAGTCGGAC ATCCCCTATC TATCGCAAGT CCCCGTCAAA
GAGTCGGACC TGAACAACAA AATGGATGGT GTGATGCGTA GCGATCCCGA CGTGATATCT
GCCGGCGAGA TACGCAATCG TGAGACAGCA CTTATGGCGC AGGATTCGTC AATTACAGGG
CATTTGACGT TCGCCACTTT TCACGCCAAT GGAATTCTCT TTTCACTGCA ACGCATGCTG
TCAGAACGGA TTGGATTTGA CCCTCACATT CTGACGGCCG ACGGCTTTTT GCGTGCGGTG
TTGTACCAGA CACTGGTGGA AATCTTGTGT CCCACATGCA AGCAGCCCGC GCTCAATGCG
CTCGCACCAG ACAAGGTTGA ACTGCTCAAG ACCAAATTCG CCCTGCCACT GGAAGGTGCC
TACGTGCGCT ACCGTGTAGG AGGCGGCGAG ACACCATGTC CGAGATGTCG CGGAACGGGC
GTCGTCGGGC GCACGGTGGT GGCAGAGGTC CTGGTGCCAA ACCGATACAT TTTGGATCTC
ATAGCGAAAA ATCAGTTCCG CGAAGCGATG GACATGTACC GAGATTTACG AACGGCTAAG
TTTCACGAAC CAGGCACGCT CGGGAAGACC TACGTTGAGC ATGCGCTCTA CAAAGTTTCC
CAAGGCGACA TATGTGCGGA CAGCATCTTT AATCTTGAAA ACCTGTGGAC GTATCTGGTA
CGGCCCCCAG CGGATCGACG CAAACCGGCT ATTGCAGGAG TCACCGCATG A
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| Protein sequence | MSLLDVFKRT STRATLVARG PSGGALRDRA ASAPASFATT GHGTGQKQGQ SARVGVIQDQ
VDLPLYRELA PIPANAKDFA ALLVSLDGRT VYLAVLPEMA TRAITHTIKQ SLSHSGSYDN
VKMIEVTTNV LHALHAARSI GRLDTQEVAG EAKGLNIRMG FELIATGIEM EASDIHIDIR
NTGRDAPMVL VRLRIHGALE EHACLRTAEA VQVYTEMVRG LYQNDTISNA LVRTSGTFNE
LDRQEAMLKP PIKNAELRFE SLPEKGGFDV VMRINGHDGK SAARKSLDQL GLSDDHTRDL
TRASQAPHGL VVVVGSTGSG KTTTITTILA MDPSAKYKKR ISLEIPPESD IPYLSQVPVK
ESDLNNKMDG VMRSDPDVIS AGEIRNRETA LMAQDSSITG HLTFATFHAN GILFSLQRML
SERIGFDPHI LTADGFLRAV LYQTLVEILC PTCKQPALNA LAPDKVELLK TKFALPLEGA
YVRYRVGGGE TPCPRCRGTG VVGRTVVAEV LVPNRYILDL IAKNQFREAM DMYRDLRTAK
FHEPGTLGKT YVEHALYKVS QGDICADSIF NLENLWTYLV RPPADRRKPA IAGVTA
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