| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3505 |
|---|
| Symbol | |
|---|
| ID | 3963355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3897121 |
|---|
| End bp | 3897609 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637918321 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_524741 |
|---|
| Protein GI | 89902270 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.168583 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAC ACATTGAAGT TGAACCAGAG GTTGAGTTCG AGGACGAATT CGTCACCGGA
CTGAAAAAAG TCTTTGAGGA AATGATTGTT TTCAACCAGG TGCTGGGCCT GAAGATCACA
TCGCTCAAAT CGACCCAGGT CCGGGGGCGC ATCGACATGA AGCCTGACTT GGTGGGTCAC
TTCAGTTTCA ACCGGCTTCA CGGCGGCGTT ATCAGCGCCG GGCTCGATGC CATGGGCGGC
CTGGCCGTGA TGGCCGCCAT TGGCGCACGC CATATGGATG AGACACCCTT GCAGCGGTTG
CATCGCTTTG GCAAGCTCGG CACCATCGAT TTGCGTGTCG ACTATCTGCG TCCAGGCATT
GGTGAGTATT TTGAGTTGCG GGCTCAAGTC ATGCGTCTGG GTTCGCGGGT GGCGTCCACC
CGCATGGAAT TTTTGGGCGC CGACGGCAAG TTGCTGTCCA CCGGCTCCGG CGCCTACATC
ATGTCGTAG
|
|---|
| Protein sequence | MTKHIEVEPE VEFEDEFVTG LKKVFEEMIV FNQVLGLKIT SLKSTQVRGR IDMKPDLVGH
FSFNRLHGGV ISAGLDAMGG LAVMAAIGAR HMDETPLQRL HRFGKLGTID LRVDYLRPGI
GEYFELRAQV MRLGSRVAST RMEFLGADGK LLSTGSGAYI MS
|
|---|
| |