Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3381 |
Symbol | |
ID | 3960953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 3757213 |
End bp | 3758472 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637918201 |
Product | twin-arginine translocation pathway signal |
Protein accession | YP_524621 |
Protein GI | 89902150 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAACGTC GTTTCACTCT CAAGGCACTC ACCGCTGCCG TCGCCCTCAC CACCCTCTCA AGCCTGCCAG CTTTTGCCGC CGACACCATC AAGGTCGGCG TTTTGCACAG CCTCTCGGGC ACCATGGCCA TTTCGGAAAC CGTGTTGAAA GACACCGTGC TGATGGCGAT TGACGAGATC AACGCCAAGG GGGGCGTGCT GGGCAAGAAG CTGGAGCCCG TGGTGGTGGA CCCCGCCTCC AACTGGCCCC TGTTTGCCGA AAAAACCAAG CAGTTGCTGG GGCAAGACAA GGTCGCCGTC ATCTTCGGTT GCTGGACTTC GGTGTCACGC AAATCGGTGT TGCCGGTGCT GGAAGAAATG AACGGCCTGC TGTTCTACCC CGTGCAGTAC GAGGGTGAAG AGCTGTCCAA AAACGTGTTC TACACCGGTG CCGCGCCCAA CCAGCAGGCC ATTCCTGCGG TGGACTATTT GATGAGCAAG GATGGCGGCG CGGCCAAGCG TTGGGTCTTG CTGGGCACCG ACTATGTCTA CCCCCGCACC ACCAACAAGA TTTTGCGCGC CTACCTGAAA TCCAAGGGCG TGAAAGACAC CGACATCGAC GAAAAGTACA CGCCGTTTGG CCACTCCGAT TACCAGACCA TCGTGGCTGA CATTAAGAAG TTCTCCGCTG GTGGCAAGAC CGCCGTGGTG TCCACCATCA ACGGTGACTC CAACGTGCCG TTCTACAAAG AACTCGGCAA CGCGGGCCTG AAGGCCAAAG ACGTGCCGGT GGTTGCGTTC AGCGTGGGTG AAGAAGAGCT GCGCGGTGTT GACACGAAAC CGCTGGTGGG CCACCTGGCG GCCTGGAACT ACTTCATGTC GATCAAGAAT CCGACCAACA CCGAGTTCAT CAAGAAGTGG ACTGCGTATG CCAAGGCCAA GAACCTGCCC GGCGCTGACA AGCCTTTGAC CAACGACCCG ATGGAAGCCA CTTACATCGG CATCAACATG TGGAAGCAGG CGGTTGAAAA AGCCAAGTCC ACCGATGTCG ACAAGGTCAT CGCCGCCATG GCGGGCCAGA CCTTCAAGGC GCCGAGCGGC ATCGTGAGCA AGATGGATGA GAAGAACCAC CACCTGCACA AGTCGGTGTT CATTGGCGAG GTCAAGGCCG ACGGCCAGTT CAACGTGGTC TGGAAGACCC CCGGCCCGGT CAAAGCCAAG CCATGGTCGC CCTACATCGA AGGCAATGCG GGCAAGCCGG ATGAGCCGGT GAAGAAGTAA
|
Protein sequence | MQRRFTLKAL TAAVALTTLS SLPAFAADTI KVGVLHSLSG TMAISETVLK DTVLMAIDEI NAKGGVLGKK LEPVVVDPAS NWPLFAEKTK QLLGQDKVAV IFGCWTSVSR KSVLPVLEEM NGLLFYPVQY EGEELSKNVF YTGAAPNQQA IPAVDYLMSK DGGAAKRWVL LGTDYVYPRT TNKILRAYLK SKGVKDTDID EKYTPFGHSD YQTIVADIKK FSAGGKTAVV STINGDSNVP FYKELGNAGL KAKDVPVVAF SVGEEELRGV DTKPLVGHLA AWNYFMSIKN PTNTEFIKKW TAYAKAKNLP GADKPLTNDP MEATYIGINM WKQAVEKAKS TDVDKVIAAM AGQTFKAPSG IVSKMDEKNH HLHKSVFIGE VKADGQFNVV WKTPGPVKAK PWSPYIEGNA GKPDEPVKK
|
| |