| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2719 |
|---|
| Symbol | |
|---|
| ID | 3963005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2999086 |
|---|
| End bp | 3001476 |
|---|
| Gene Length | 2391 bp |
|---|
| Protein Length | 796 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637917539 |
|---|
| Product | hemolysin-type calcium-binding protein |
|---|
| Protein accession | YP_523964 |
|---|
| Protein GI | 89901493 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA CGACTGAATA CGCACTGATG GCGGGCCATG TTTATCGCAC AACGCGCGAC
GAAATAAATT GGCTTCCAGC TCCGCAAGGG TGGACGCCAT ATTTCCCGGT TCCCGATTCC
ACCACGGCTA CAGGTTTTCC GGTCACCTCA GGCTTCGAAG CCATCTCATT CCAAAAAGGC
TCGGAAATCG TCATCTCCTA CGCCGGCACC TACGACAAAG ACTATTCCGG CGACATGGTG
GCAAACGCCG GTCTGGCGAC TGGCGTCGGG TCGACCCAAC TGTTGCAGGC TGTCGAGTAC
TACCTGCAAG TCAAGGCCGC CAATCCCGGC GCAACGATCA CCCTCACGGG TCATAGTTTG
GGCGGTGGGC TGGCTGCGCT GGTCGGCGTG TTCCTTGGCG TCCAAGCCCA GACATTCGAC
CAGGCCCCCT TTGCCAAAAC CGCCTGGTTC AAGGCGCCCG ACGTCATGGC TTATCTGTCC
AGCCAGACGG ACCCCAGCGG CAACCGCCTG TACAGCGACG CGGCACTCAA ACCGCTGGCG
AGCTACATCG AGCAAAAGGA AGCGTTCGGC GCGGCCACCA CCTTCATACC CAATGCTGCC
TTGATCAGCA ATATCAATGT CCAGGGAGAG TTTCTGTCCA GCGCGCCCTG GACCGTGTAT
GACCGTATCG GAACGACCAC CCAAACCATT GCCAACAGCG CGCCGGGCGT GTCAGGCTTT
GACCTGCATG CTCAGGCGCT GCTTACTGCC TTTTTACAAA GCCAGCAGAC CGCCGCGCCC
GGCCAAGCTC TCAATGAACT CACGGCCAAG CTGACCGGTG TGTTGCCGCT GATTTTTGAC
ACCAAGCTGT ATGCCTACTC GACCTCAATC AGCAACACAA CCAACGTCAA CTTCCTCGAT
CACCTGGTTC GTCACGAAAC CGGCGGCATA GGCGGCATGC CTGCAGGCGG CGACGCCATG
CTCACCCACT TCGCTTCCGA CCTCAACAAA CTCGGCACCA ACATCGCCGG CCTGAACAAG
CAGGCCCAAG ACGCCATCAT CGCCCAGGGC ATCGAGTGGT ACTACTGGCA AGGCACCGAT
TACGCAGGCA AGGAATTCAT CACCCAGACG GGCGCCCTGC TGCAATACAC CAGCGCCATC
GGTGATGGCC TGCAAGACGC GCAAAACAAA GCCGCCGCCT ACGCCAAGCT CTGGCTCGAC
CCCAAGGCCG CAGCCCATGG TGCCTATGGC GTTGGCACCA CCTACGAGCA GTGGAATGTC
AACACAGGCA CCAGCGCGGT GACCGCCACG GCGCGCGATG TCGACAAAAG CCAGATATTC
CTCGGCCAGG GTGGCGCAGA AACTTTCACC GGTGGCAACA AGAACGACGT CATGCTGGCC
GATGATGGCG ATGACACCCT GGACGGCGGC AAAGGCGACG ACAAGCTCTA TGGTGGCAGC
GGCACCGACA CCTACACCTA CACCTTCACC TCCAGCGACT TGGTCGGCTG GGGGACAGAC
ACCATCGGGG ATACCGACGG CATCATCAAG ATAGACGCCG ACACCCTGGG CGGCGGCAAA
AGCATCAGCC CCCGGCTCGG GCGCGCCTGG ATCAGCGATG ACAAGAAATA CCAGTTCCAG
TTCAAGCCCG ATGCGCTCAC CCCCAACGGC ACAGCGGCTG ACAGCAATGG CACTCTTGTG
ATTCACCGCA CCGGGCGGCT GGCAGACAAG GAGGCCATCG TCCTGAACAA CTGGAGCCAG
GGCAAGTTTG GCATCACCCT CACCACCGAC GCAGCCCTGC CGGTGAGCCC GGCACAAGTC
CGTGTCGTGA ACGGCGATAC CGTGCCGCTG AACACCAGCA CCAATGCCGA CACCGGCGAA
GTGACCTACA TCGGCAGCGC CACCGTGGCA GCGCCCGGCA ACAGCGATGC GATCACGGCT
TACAACACCT CCAGCAGCAT CAAGCGGGTA GAGGTCTATG GCCTGGACGG CAACGATGCG
CTGATTGGCG ACGCGTCGCA AAACCTGATC GACGGCGGTG CAGGCGACGA CTTGATTGCC
GGTGGCCTGG GTCTGAACAC GCTCATTGGC GGGGAAGGCA ACGACATCAT CCTCACCCAC
TTCACGCCCG GCATTGCTGG GCGACGAGGT CCTGACGACA GCAAGAACCA GATATTCATC
GGCGGTGCGG GCGCAGACAC GCTCGATGGC CAGGATGCCA TCTACAGCCG ACTTCAAGTC
TGGCAGGACG GTAATGGGGT GAGCGACATG AACAGAAGGA GCCTGATCGT CGATCCTAAA
TTAATAGCTA CTTGCGAACG TTCCATGCGA GCTAGAGGCC GATTTCGTAT GAAACATCTA
GTTGTTAGTG GGTTGCCGTG CACCCAGGCA AGAGTTGAGG TCTTGCAATG A
|
|---|
| Protein sequence | MTTTTEYALM AGHVYRTTRD EINWLPAPQG WTPYFPVPDS TTATGFPVTS GFEAISFQKG
SEIVISYAGT YDKDYSGDMV ANAGLATGVG STQLLQAVEY YLQVKAANPG ATITLTGHSL
GGGLAALVGV FLGVQAQTFD QAPFAKTAWF KAPDVMAYLS SQTDPSGNRL YSDAALKPLA
SYIEQKEAFG AATTFIPNAA LISNINVQGE FLSSAPWTVY DRIGTTTQTI ANSAPGVSGF
DLHAQALLTA FLQSQQTAAP GQALNELTAK LTGVLPLIFD TKLYAYSTSI SNTTNVNFLD
HLVRHETGGI GGMPAGGDAM LTHFASDLNK LGTNIAGLNK QAQDAIIAQG IEWYYWQGTD
YAGKEFITQT GALLQYTSAI GDGLQDAQNK AAAYAKLWLD PKAAAHGAYG VGTTYEQWNV
NTGTSAVTAT ARDVDKSQIF LGQGGAETFT GGNKNDVMLA DDGDDTLDGG KGDDKLYGGS
GTDTYTYTFT SSDLVGWGTD TIGDTDGIIK IDADTLGGGK SISPRLGRAW ISDDKKYQFQ
FKPDALTPNG TAADSNGTLV IHRTGRLADK EAIVLNNWSQ GKFGITLTTD AALPVSPAQV
RVVNGDTVPL NTSTNADTGE VTYIGSATVA APGNSDAITA YNTSSSIKRV EVYGLDGNDA
LIGDASQNLI DGGAGDDLIA GGLGLNTLIG GEGNDIILTH FTPGIAGRRG PDDSKNQIFI
GGAGADTLDG QDAIYSRLQV WQDGNGVSDM NRRSLIVDPK LIATCERSMR ARGRFRMKHL
VVSGLPCTQA RVEVLQ
|
|---|
| |