Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1634 |
Symbol | |
ID | 3964163 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 1764009 |
End bp | 1766111 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637916457 |
Product | TRAP transporter, 4TM/12TM fusion protein |
Protein accession | YP_522895 |
Protein GI | 89900424 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTAACG CCGCAAATGA CACGCCGCAG GGCCTGTTCG ACCATCCTGC ACCAACCGAT GAATTCCAGG AGCACGGTCA TACCCGCAAT CTCGGCGGGT GGGCGTTGAA GACCGTGGTC TTTGCCGCCA TCGCTTTTTC CGCTTACCAG TTGATGGTGG CCGGGTTCTC ACCGTTGTCC AGCCTCATCA CCCGCGCGTT CCACGTCGGC TTCCTGCTCC TGATCGCTTT CCTGCTCTAT CCTGCCCTGC AGCGCGCCAA GCCGCAGACC CGCATCCCCT GGTACGACTG GATTCTGGCG CTGACCGGTT TCGGCCTCGC CTTCTACCAC TGGATTTTCG AGGCTGACCT GATCCAGCGC TCGGGCGATC CGACCATGAC CGATCTCGTC GTCGGCGCCA TTGTGGTTCT ACTGGTATTC GAGGCCGCCC GGCGCATCCT CGGCATCGCA CTGCCCATCG TTTGCGGCCT GTTCCTGCTC TATGGCCTGT TTGGCCAATA CCTGCCGGGC GATCTGGCCC ATCGGGGCTA TACCCTGGCG CAACTTGTGG ACCAGCTTGG CTTCGGCACC GAAGGCATCT ATGGCATCCC GACGCTGGTG TCGGCCACCT ATATTTTCCT GTTCATCCTG TTCGGTTCCT TCCTTGAACA CGCCGGCATG ATCAGGCTCT TCAATAGCGT GGCGCTGGGC TTCGTCGGCC ATGCCCAGGG CGGACCGGCC AAGGTGGCGG TGATCTCCTC CGGCTTCATG GGCATGATCT CGGGCTCGGG CGTCGCCAAC GTGCTCACCA TCGGCCAGTT CACCATCCCG CTGATGAAGC GCTTCGGCTA TTCGTCCGTC TTCGCCGGCG CCGTCGAGGC CACCTCCTCG ATGGGCGGCC AGATCATGCC GCCGGTGATG GGCGCGGTCG CCTTCATCAT GGCCGAAACG CTCAACGTGC CCTACGCCGA CATCGTCAAG GCTGCGGTGA TCCCGGCCTT CCTCTATTAC TTCACGGCCT TCGTCATGGT GCACCTGGAG GCCGGCCGCC TGAAGCTGCT CGGCATCCCC AAGGACCAGT GCCCGAATCC CTGGCGCGCC ATCAAGGACA ACTGGTACCT GATCCTGCCG CTGGCGGCAC TGGTGGTGAT GCTGTTCGAA GGCTTCACGC CGATGTTCGC GGGCATGATG GGCCTGGCCC TGACGGCCAT CCTGATTCTG GGCAGCGCCA TCGCCGCGCG CATTTCACAA ACGGCATTCC GCGTCGTGTT CTGGTTCGCG ATGGGCCTGG CAGCCGCCTC ATTCGCCAAA TGGGGCATAC AGCCAGTAAT GGCGGTGATC GCCGCGCTCG CGGTCGGCAA CCTGTTCGTC CAAGGCGGCA AGAAGACCCT GCACACCATG AAGATGAGCC TGGTCGACGG CGCCAAGCAG GCGCTGCCGG TGGGTATCGC CTGCGCCGTC GTCGGCGTCA TCATCGGCGT CTTGACTCTG ACCGGGGCGG CCTCCAGCTT CGCCGGCTAC ATCCTGACCA TCGGGCAGAA GAGCCTGTTC GCCTCGCTGT TCCTGACCAT GATCGTCTGT CTGATCCTGG GCATGGGCAT CCCGACCATT CCCAATTACA TCATCACCAG CTCCATTGCC GCCCCGGCCC TGCTCAAGCT CGGCGTGCCG CTGATCGTCT CGCACATGTT CGTGTTCTAT TTCGGCATCA TGGCCGATCT GACGCCGCCG GTGGCGCTGG CCGCCTTCGC CGCTGCCTCG ATCGCCAAGG CCTCGCCGAT GAGGATCGGC TACAAGGCCA CCCAGATCGC CATCGCCGGT TTCGTCGTGC CCTTCATGGC GGTCTACGAC CCGGCGCTGA TGCTGCAGGG GCAATGGACC GCTCTCACCG TGGCCTACGT CGCTTTCAAG GCGGTGCTCG CCATCAGCCT GTGGGCCGTG ATGACCATCG GCTACCTGTG GCAGCCCGTC GGATTGCTCT GGCGCGTTTT TGCCTTCGTC GCCGCCGCCC TGCTGGTGGC CGCCATCCCC TTCACCGACG AAATCGGCTT CGCCATGGCA GCCGTATTTA TCATTTGGCA GTGGTTCAGG AATCGCAAGG CACCCCAATT AGCAGTTGCA TGA
|
Protein sequence | MTNAANDTPQ GLFDHPAPTD EFQEHGHTRN LGGWALKTVV FAAIAFSAYQ LMVAGFSPLS SLITRAFHVG FLLLIAFLLY PALQRAKPQT RIPWYDWILA LTGFGLAFYH WIFEADLIQR SGDPTMTDLV VGAIVVLLVF EAARRILGIA LPIVCGLFLL YGLFGQYLPG DLAHRGYTLA QLVDQLGFGT EGIYGIPTLV SATYIFLFIL FGSFLEHAGM IRLFNSVALG FVGHAQGGPA KVAVISSGFM GMISGSGVAN VLTIGQFTIP LMKRFGYSSV FAGAVEATSS MGGQIMPPVM GAVAFIMAET LNVPYADIVK AAVIPAFLYY FTAFVMVHLE AGRLKLLGIP KDQCPNPWRA IKDNWYLILP LAALVVMLFE GFTPMFAGMM GLALTAILIL GSAIAARISQ TAFRVVFWFA MGLAAASFAK WGIQPVMAVI AALAVGNLFV QGGKKTLHTM KMSLVDGAKQ ALPVGIACAV VGVIIGVLTL TGAASSFAGY ILTIGQKSLF ASLFLTMIVC LILGMGIPTI PNYIITSSIA APALLKLGVP LIVSHMFVFY FGIMADLTPP VALAAFAAAS IAKASPMRIG YKATQIAIAG FVVPFMAVYD PALMLQGQWT ALTVAYVAFK AVLAISLWAV MTIGYLWQPV GLLWRVFAFV AAALLVAAIP FTDEIGFAMA AVFIIWQWFR NRKAPQLAVA
|
| |