| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_A2309 |
|---|
| Symbol | |
|---|
| ID | 3609015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007347 |
|---|
| Strand | - |
|---|
| Start bp | 2545721 |
|---|
| End bp | 2548579 |
|---|
| Gene Length | 2859 bp |
|---|
| Protein Length | 952 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637691714 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_296515 |
|---|
| Protein GI | 73541995 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGTGA GCCAACATCG CCGGAAGAAT GCGCCAACCG TCCGTCAGCG CTGGTCAACG
CTGGCCGTCA CGGCTCTCGG GCTGCTGCTT GCGCAGCCAG CTGCGTATGC CGCGGGGTTC
GGGCAATTGC GGGTACAGTC GAATCTGGGG CAACCGCTGC AGGCGGAGAT CGACATCAGC
GGGGTGACTG CCGAAGAGGC AGCGGGATTG AACGTCAAGC TGGCCTCGCC GGCGGCGTAT
GCAAGCGCGG GGCTGACGTA TCTGCCGGCC GTGAGCAGCT TGCGACTCGA TATCGAGCGC
CGTCCCAATG GCAGCTACGT GGCCAAGGTC CGGTCCAGCC AGCCGATCAG CGAGCCGTTC
GTCGATATTC TGATCGACAT GAGCTGGTCC AGCGGCAAGG TGTCGCGGGC CTATACTTTC
CTGCTTGACC CCGCCGGGGC CAAGCCTTCC AACCAGACTT TCTCGCCGGC GACGGTCGTG
CAGGCCGCCA CGCCGGATGC CTCGCCGGCT GCCGCACCGG CGCCGGTGCC ATTGCAGGAA
CCCGCACCGG CTGCCGCCCA GAGCACGCAG CCCGCTGCCC AAGCGCAGGC GCAGGCCGCA
AGGCCCGCGA GGCAGCCCGC CAGTCGTCGT AGCCACGCGG CTCAGGCTGT CACCGGGGGC
GAGTCACCGG CAAGCGGAGC GTACACGGTC AAGCGCGGGG ACACGCTGTC GTCGATCGCC
AACGATGCGC TGCTCGATCA GGAGGGCGTA TCACTCGATC AGATGTTGGT CGCGCTGTAC
CGCAATAATC CTAATGCCTT CATCGGCGGC AATATCAACC GCCTGAAATC CGGCACGGTG
CTGCAGGTGC CTTCGCGCCA GCAGGCGCAG TCGCTCACGC CCAAGGCCGC TCGCCGCGAG
GTGGTGGCCC GTACGCAGGG CTTTGACGCG TACCGCAGCC GGCTGGCTGG TGCTGCCGCG
GCGAAGTCGG TCGAGGCGGA CAGCGGGCGC CAGCAGTCGG GCAATGTCAC GGCGCGCGTG
CAGGACCAGG CCGTTCCGGC CGCTGGTCCG CAGAACGAAC TCAAGCTGAG CAAGGGCGAG
CGCGCGGGCC AGGCCAATGC CACCGCGCAG GCCGAGGAAA ACGTCGCGCG CGACCGGCAA
CTGAAGGAAG CCGAATCGCG GCTGGCGCAG TTGCAGAAGA ACGTTGGCGA CATGCAGAAG
CTGCTCGAGC TGAAGAACAG CGAGATCGCC AAGCTATCCC AGGCCAACCA GGCCAACCAG
GCTAACCAGG CTAACCAGGC TAACCAGGCC GCTGCGGCCG ACAAGGGCAG GGCGGAAAAG
GCTGCGCCGG CGGAAGCCAA GGCGCCGACC GTGGTCGCGG CCGAACCGCC TAAGACTGAT
GCACCGGCCC AGGCCGCACC GGCCACACCG ACGGCACAAG TCGATGCCGC AAGTGCCGCC
CCGGCCCAGG CTGCAGCGGC GGCAACCGCT GCGGTGGCTA CTAGTCCGGC TACTCCGGCT
GCCTCGGCAC CGGTTGCCGG TGCCAGCACT GCACAGGCTG CAGCGCCCGC ACCCAAGCGT
CCACCGGTCG TGGTCCAGGC CGAGCCGGCG CCGGAGCCGT CGTTCCTCGA CGGTCTGCTG
GCCAATCCTA TGCTGTTGCC CGGTGGTGGC CTGCTGGTGG CGCTGCTTGG CGGCTATGCG
ATCTACCGTC GCCGCCAGCA GCAGAAGTCG GCGGATGGCG GAGCCTTCGG TGACTCCATC
CTGTCGCAGG AAAGCACCGT GATGGCCGGC GCCAATTCGC TGTTCGGTGC AGCCGGCGGG
CAGAGCGTGG ACACGTCGCA GCACAGCGTG TTCGGCGCGG ATTTCCGCAT CGGCAACAAC
ATGCCGGAAG CCAGCGAGGT CGACCCGATC GCCGAGGCGG AGGTCTATAT CGCCTACGGG
CGCGACGTGC AGGCGGAAGA GATCCTGCGT GAAGCGCTCG AGAAGGACCC GGAGCAGCAG
CCGATCCGGC TCAAGCTCCT GGAGATTTAC AGTAATCGTC AGGATGTGGA AGGTTTCCGC
GTGATTGCAG AAGAGATGTT CGCCCAGACC GGCGGACAAG GGGCGGAATG GCTCAAGGCC
GCGGAAATGG GGCGCGCACT CGATGCGGGC AATGCGTTGT ACCTGGCGGT GTCGCCGGAC
ACGAGCAGCG GGCCGGAAAC GTCCACGCCG GCGTCGGACC AGTGGCGCAC GCAGGACCCG
TCGCACGATC CGGCCGTGGC GCCGCGCGAA CCTTCGCTGG GTGATCTGGC GCTGCCGCTG
GATGCCTTCC CGGCACCGGC GGCTGGTGAT CCGATCATTG CGCCGGAGTC GGCGTCGCTG
GTCTTCAGCG ACACCGCCAT GCGCGCCGAC GCACCGCTGG AGCCTGCAGC GAAGTTCGAC
GGTGACCTGG ACCTGACGCT GCCGGTCGAC GGTGACGACA CCCTCGCAGA CGTGCCCCGG
CTGGACACGC CGACCCGCTC TCGCATGATG GAATTCGACA TGTCGGGCCT CTCGCTCGAC
TTCAATGCCG ACGCCGCCAC CGAGTCCAGG GACGAAGCCG ATGCGACCAC GCAGCTTCCT
TCGCCGACCA TGATCCGCGA CGGCAAACTG CCAGAGCCGA TCGATCTGGC CGCCCTGGGC
GACACCGGTC CCGACACCAC GCCGGGCGTT TCGCCGAGCA CGCTGTCGAC AGACGGCATG
GACGGTGGGC GCGACATGCA GATCAAGCTG GACCTGGCCC GCGCCTATAT CGAGATCGGC
GACAAGGAAG GGGCGCGCGA GCTGCTGCAG GAAGTCGTGG AGCAGTCGCA GGACGACCTG
CAGGCGGAGG CGCGTTCGCT GCTGCTTGAG GTGGTCTGA
|
|---|
| Protein sequence | MSVSQHRRKN APTVRQRWST LAVTALGLLL AQPAAYAAGF GQLRVQSNLG QPLQAEIDIS
GVTAEEAAGL NVKLASPAAY ASAGLTYLPA VSSLRLDIER RPNGSYVAKV RSSQPISEPF
VDILIDMSWS SGKVSRAYTF LLDPAGAKPS NQTFSPATVV QAATPDASPA AAPAPVPLQE
PAPAAAQSTQ PAAQAQAQAA RPARQPASRR SHAAQAVTGG ESPASGAYTV KRGDTLSSIA
NDALLDQEGV SLDQMLVALY RNNPNAFIGG NINRLKSGTV LQVPSRQQAQ SLTPKAARRE
VVARTQGFDA YRSRLAGAAA AKSVEADSGR QQSGNVTARV QDQAVPAAGP QNELKLSKGE
RAGQANATAQ AEENVARDRQ LKEAESRLAQ LQKNVGDMQK LLELKNSEIA KLSQANQANQ
ANQANQANQA AAADKGRAEK AAPAEAKAPT VVAAEPPKTD APAQAAPATP TAQVDAASAA
PAQAAAAATA AVATSPATPA ASAPVAGAST AQAAAPAPKR PPVVVQAEPA PEPSFLDGLL
ANPMLLPGGG LLVALLGGYA IYRRRQQQKS ADGGAFGDSI LSQESTVMAG ANSLFGAAGG
QSVDTSQHSV FGADFRIGNN MPEASEVDPI AEAEVYIAYG RDVQAEEILR EALEKDPEQQ
PIRLKLLEIY SNRQDVEGFR VIAEEMFAQT GGQGAEWLKA AEMGRALDAG NALYLAVSPD
TSSGPETSTP ASDQWRTQDP SHDPAVAPRE PSLGDLALPL DAFPAPAAGD PIIAPESASL
VFSDTAMRAD APLEPAAKFD GDLDLTLPVD GDDTLADVPR LDTPTRSRMM EFDMSGLSLD
FNADAATESR DEADATTQLP SPTMIRDGKL PEPIDLAALG DTGPDTTPGV SPSTLSTDGM
DGGRDMQIKL DLARAYIEIG DKEGARELLQ EVVEQSQDDL QAEARSLLLE VV
|
|---|
| |