Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4376 |
Symbol | |
ID | 5541889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5629822 |
End bp | 5631393 |
Gene Length | 1572 bp |
Protein Length | 523 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640896482 |
Product | malate synthase |
Protein accession | YP_001434418 |
Protein GI | 156744289 |
COG category | [C] Energy production and conversion |
COG ID | [COG2225] Malate synthase |
TIGRFAM ID | [TIGR01344] malate synthase A |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGACACAC CGCAGCGTGT CGAAATTCTC GGTTCGACCA GGCCGGAGTG GTCGGAGATC CTCTCGGTTG AAGCGCTCGA TTTTATTGCT GCTCTGGCGC GTCAGTTCGA ACATCGCCGG CGCGCGTTGC TTGCGGCGCG CGAGCAGCGT TGGGCGGATA TCAGAGGGGG CGCATTGCCC GATTTTCTGT CGGAGACGGC TGAGATTCGC GGCAGTGATT GGAAGGTGGC GTCGATCCCT GCCGATTTCT CGAACCGGCG TGTGGAGATT ACCGGTCCGA CCGATCGGCG TATGGTGATT AACGCCCTGA ACTCCGGTGC GCAGGTGTTC ATGGCCGATT TTGAGGACGC GAATGCGCCC ACCTGGGAGA ATATGGTGCA GGGGCAGCTC AACCTGCGCG ATGCCGTGCG TCGGACGATC ACGTTCGTCA GTCCGGAGGG GCGCGAGTAT CGCCTGAACG ACACGATTGC AACGCTGGCG GTGCGTCCGC GTGGCTGGCA TCTGATTGAG AAGCATGTCC ATGTGGACGG CGAGCCGGTG GCCGGCGCGT TCTTCGATTT CGGTCTTTAT TTCTTCCACA ATGCGCGCGA ATTGATCCGA CGCGGCAGCG GTCCGTACTT CTATCTGCCG AAGATGCAGA GCCATCTGGA AGCGCGCCTG TGGAACGATG TGTTCAATTT TGCCCAGGAT CGGCTTGGTA TTCCGCGCGG CACGATCCGT GCAACGGTGC TGATCGAGCA TATTCTTGCC GTCTTCGAAA TGGAAGAAAT CCTTTACGAA TTGCGTGAGC ATAGCAGCGG CTTGAACCTG GGACGCTGGG ATTATATCTA CAGTTTTATT AAGACGTTCA ACCATCGCAG CGACTGGATT TTTCCCGATC GGGCGCAGGT GACGATGACG ACACATTTCC TGCGCTCAGC GGCGGAACTC CTGGTCTATT CCTGCCACAG GCGCGGCGCT CACGCGCTCG GTGGTATGTC GGCGTTTATT CCGAACCGGC GTGAGCCGGA GATTACTGAA CGCGCGCTGG CGCAGGTTCG CGCCGATAAG GAGCGTGAGG CAAAGCAGGG GTTCGATGGC GCCTGGGTGG CGCATCCCGA CCTGGTGCCA ACTGTGCTTG AGGTCTTCAG TGCCGCGTAT GAGGGCGATC ATCAGATCCA TTACGTGCCG CAGGTTCATG TCACTGCTGC CGATCTGCTG ACCATTCCGC AGGGGACGAT TACCGAAGCG GGGTTGCGCA ACAATATCAC GGTTGCGTTG CAGTACATCG AAGCGTGGTT GGGCGGTCGC GGCGCGGTGG CGATCTTCAA CTTGATGGAA GATGTGGCGA CGGCGGAAAT TGCGCGCTCG CAACTCTGGC AGTGGGTGCG CTACAATGCC CGCCTGGATG ATGGACGCAC CATTGATGAG ACAATGTATA AGACGATGCG CGACGAAGAA TTGCACACGC TGGTCGCGGC GCGCACCGGT GATCATCATT TTGCGCTGGC GGCGGAATTG CTCGATGAAC TGACGCTGTC GCGCGATTTT GTGGAGTTCC TGACCATCCC CGGCTATCGC CGTCTGGATT GA
|
Protein sequence | MDTPQRVEIL GSTRPEWSEI LSVEALDFIA ALARQFEHRR RALLAAREQR WADIRGGALP DFLSETAEIR GSDWKVASIP ADFSNRRVEI TGPTDRRMVI NALNSGAQVF MADFEDANAP TWENMVQGQL NLRDAVRRTI TFVSPEGREY RLNDTIATLA VRPRGWHLIE KHVHVDGEPV AGAFFDFGLY FFHNARELIR RGSGPYFYLP KMQSHLEARL WNDVFNFAQD RLGIPRGTIR ATVLIEHILA VFEMEEILYE LREHSSGLNL GRWDYIYSFI KTFNHRSDWI FPDRAQVTMT THFLRSAAEL LVYSCHRRGA HALGGMSAFI PNRREPEITE RALAQVRADK EREAKQGFDG AWVAHPDLVP TVLEVFSAAY EGDHQIHYVP QVHVTAADLL TIPQGTITEA GLRNNITVAL QYIEAWLGGR GAVAIFNLME DVATAEIARS QLWQWVRYNA RLDDGRTIDE TMYKTMRDEE LHTLVAARTG DHHFALAAEL LDELTLSRDF VEFLTIPGYR RLD
|
| |