| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4246 |
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| Symbol | |
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| ID | 5541757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5488068 |
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| End bp | 5489849 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640896353 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001434291 |
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| Protein GI | 156744162 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.286976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAC GCGCACTCTT TCTGATCATC GTTCTTATCA TCGTTGGGTG CGGTGCGCCT
TCTGCGGCAG TTCCGCCAAC TGCCACACCG CCTGCCGCAC CTTCCGCTAC GCCGTTAAGC
GAAGAAGCAG CGCTGCTCGC CACCATGGCG GCGAATGCGC CCTCTCCCGC AGAGGCGACC
CCCACCGTCC CACTGCCGAC CCTGTTTCCG ACTATCACCC TCGGACCGAC TGCGGAACCG
CGACCGTTGC CGGCCGGATG GTGGGACACC GCCGTGTGCT ATGAAATCTT CGTGCGCTCG
TTCTACGACA GCGACGGCGA TGGGATCGGC GATATCAACG GGCTGATCGC AAAACTCGAC
TACATCAACG ATGGCGATCC AACCGGCGGT TCCGACCTTG GCGCCAACTG TATCTGGCTG
ATGCCGGTGG CGGAAGCCGC CAGCTACCAC GGTTACGATG TCATCGACTA TAACGCCATC
GAAAAAGATT ATGGCACAAA CGACGATTTC AAGCGTCTTG TGGCAGAGGC GAACCGGCGC
GGCATCCGGG TGATCGTCGA TCTAGTGTTG AACCACACAT CCAGCGCGCA TCCCTGGTTT
ATCTCGGCGC TGAACGATCC TGCATCTCCC TATCGCGACT GGTACATCTG GTCGCCGGTC
GATCCCGGCT ACCGCGGACC GTGGGGGCAA CAGGTCTGGC ACCGTTCACC GGCGCGCAAC
GAGTACTACT ATGGCGTTTT CGTCGCCGAA ATGCCCGATC TGAACTACCG CAACCCGGAA
GTCGTCGCTG AAGCGGAGAA GATCGCCGCC TTCTGGCTGA ACGAGATGGG AGTCGATGGG
TTCCGCCTCG ATGCGATCAA GCACATTGTG GAAAACGGTT CCGAGCAGGA AGGCACGCGC
GAAACCCATG CCTGGATGCG CTCATTCGAG GCAGCCATCG AGCGCATCAA ACCGGGAGCG
TTCACCGTTG GCGAAGTCTT CGGCGGGCGC GCCGGGTCGC TTGACGCCTA CTATCCCGAC
CAACTCGACA CCTACTTCGA GTTTGGCGTT GCGGAAGGAA TCTTGCGCTC CGCCAACACC
GGCGCGCCGG GACCGTACCT GACGGCGGTG GAAGATGCGC TCATGCGCCT TCCATACCAG
CGTTGGGCGC CATTCCTCAC CAACCACGAC CAGGAACGGG TGATGACTGT CCTCGGCGGC
GATGCCGGTA AGGCGCGCGT TGCGGCCATC GCCCTGCTGA CTCTTCCGGG TCTCCCATTT
GTGTACTATG GCGAGGAGAT CGGTATGACG GGCGCCAAAC CGGATGAGCG CATCCGCACG
CCGATGCAGT GGACGGGCGA ACCGGGAGCG GGATTCACGA CCGGTTCGCC CTGGCAGGCG
CCCCAGAGCG ATTTCCCGAC GGTCAACGTC GCCGCGCAGG ATACCGATCC CGACTCGCTG
CTCAACGTCT ATCGGACCCT CATCCGGTTG CACACCACCC GTCCGGCGCT CGGCAAGGGC
GATTTCACCG CGCTGAACGC GACCGGCGGC GCAGCGGCGT TCCTGCGGCG CAGCGGCGAC
GACGCGGCGC TGGTGGTGAT CAACTTCAGC GCCAACCCGC TCTCCGGCGT GACCCTCTCG
ACTGCGCAGA GCAATCTCGA TCCCGGCGCC TACACCCCTG AACTGCTCTT CGGCAGTGGA
AACCTGTCGC CGCTCATCGT CGGCGCCAAC GGGTCAATCA GCGCGTATGC GCTGCCTGAG
ATTCCGCCGC AGCGCGCGGT GATTGTTGGG TTGGGGAGAT GA
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| Protein sequence | MKARALFLII VLIIVGCGAP SAAVPPTATP PAAPSATPLS EEAALLATMA ANAPSPAEAT
PTVPLPTLFP TITLGPTAEP RPLPAGWWDT AVCYEIFVRS FYDSDGDGIG DINGLIAKLD
YINDGDPTGG SDLGANCIWL MPVAEAASYH GYDVIDYNAI EKDYGTNDDF KRLVAEANRR
GIRVIVDLVL NHTSSAHPWF ISALNDPASP YRDWYIWSPV DPGYRGPWGQ QVWHRSPARN
EYYYGVFVAE MPDLNYRNPE VVAEAEKIAA FWLNEMGVDG FRLDAIKHIV ENGSEQEGTR
ETHAWMRSFE AAIERIKPGA FTVGEVFGGR AGSLDAYYPD QLDTYFEFGV AEGILRSANT
GAPGPYLTAV EDALMRLPYQ RWAPFLTNHD QERVMTVLGG DAGKARVAAI ALLTLPGLPF
VYYGEEIGMT GAKPDERIRT PMQWTGEPGA GFTTGSPWQA PQSDFPTVNV AAQDTDPDSL
LNVYRTLIRL HTTRPALGKG DFTALNATGG AAAFLRRSGD DAALVVINFS ANPLSGVTLS
TAQSNLDPGA YTPELLFGSG NLSPLIVGAN GSISAYALPE IPPQRAVIVG LGR
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