| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4098 |
|---|
| Symbol | |
|---|
| ID | 5541609 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5311811 |
|---|
| End bp | 5312173 |
|---|
| Gene Length | 363 bp |
|---|
| Protein Length | 120 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640896210 |
|---|
| Product | anti-sigma-factor antagonist |
|---|
| Protein accession | YP_001434148 |
|---|
| Protein GI | 156744019 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
|---|
| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.217078 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.168859 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGATG ATGAGCTGCG TGTACATATT CGCGAGCGTG AAGGGGTGGC GATTATCGAT
CTGGTCGGCG ATGTGACCAC CTTTGCCGAA GAGAAGATTA CCGGCGCCTA CAATGAAGTT
TCGCGCAAAG GCGCACGAAA CATTCTGCTC AATTTTCGTC AGAACGATTA CATCAACAGT
GCCGGCATCG CCATCTTGAT CGGTGTTGTC ACCGAAGTCA ATCGCAATAA TCAGCGGCTG
GCAGTCAGCG GGTTGTCGCA ACACTTTCAG AAAATCTTTC GCATGGTTGG TCTGGCGCAG
TATATCGACA TTTATCAGGA CGAAGATGAG GCGATTCGTG GTCTGACCGC CGCAATGGCC
TGA
|
|---|
| Protein sequence | MQDDELRVHI REREGVAIID LVGDVTTFAE EKITGAYNEV SRKGARNILL NFRQNDYINS
AGIAILIGVV TEVNRNNQRL AVSGLSQHFQ KIFRMVGLAQ YIDIYQDEDE AIRGLTAAMA
|
|---|
| |