| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3886 |
|---|
| Symbol | |
|---|
| ID | 5541392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5085330 |
|---|
| End bp | 5087090 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895997 |
|---|
| Product | membrane protein-like protein |
|---|
| Protein accession | YP_001433940 |
|---|
| Protein GI | 156743811 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3463] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.920923 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGGC ACGAAAGCCT TCGTGGATCG TCCGGCAAGG CACGAGTTTT GCACAATCTA
GGGTGCGACA TAAATGTCGC GGCACGAAAG CCTTCGTGGA TCGTGTGGCA AGGCACGAGT
TTCGCACATA TGACACAAGC GCTTGCATCA CAACGCGAAC GTTCCAACAC CTGGATCGCG
CACATGCTCA CCGCAATCGA GCGGCAGGCG AGTCTGGCGC TGGCAGCGTT TATCATGCTC
TACGTCGCAG TCCTTTTCTT TGGACTGACA TTCAAGTACT TCAGTTGGGC GCAGGGGTAT
GATCAGATTG ATTATCAGCA GTCGATCTGG AACACAACCC AGGGTCGTTT CCTCGAGATT
TCGCACTACC GCCACACCGA TCACCTGTGG GGCATGGATT TCATTCCGGC GATCCTGCTG
ATCGTTCCAT TCTATGCGCT CTTTCCATCG GCGCTAACGC TCAATTTCTT CCAGGCGCTC
TTTATGGCGC TTGGCGCGCT GCCGATCTAT GGGATCGCGC GCGACCGCTT CGATGGTTCG
CGCCTCGCGG GTCTCGGATG GGCGCTTGTT TATCTGCTCT ATCCATCGCT CTGGTTTGTG
ACGATGAGCG CACCATGGCA ACCGCGCACA CTGGCGATCC CGGCGCTGCT CGGCGCGTTT
TTCTTCCTGC AACGCGCCAC GTTCCAGCGC GCAGGCATCC GGGAGTGGGG CGCATATCTG
GGATTACTGG CACTGGCGCT GACCACACGC ACCGATGTGT CGCTGGTGGT GGTCTCGTTC
GGCATTCTGG CGGCGCTGTG GCGCGTCGGC TGGCGCTGGG CGCTCCCGCC GCTCATGATG
GGACTGGCAT GGTTCTATCT TTCGACGAAT GTGATCGTGC CATCGTTTTA CCTTCCCGAT
TATCAGGTGC GCGAGGGAGA GATCGGCGCG GTGACGGAGG GCGATTACAC CGAGGTCTGG
CCCGGCAAAA GCCCGCAACT GGCGTACTAT TCGCATCTCG GCGACAGTGC GGGCGCTATT
CTGTGGACGA TTGTCAGCCG ACCGATTGAT GTGCTGCGTC TGATGTTTAC ACCGGATAAG
TTGGTTTATC TGGCGCTGAT GCTGCTTCCG CTGGCGCTGC TCCCGTTGCT CGCGCCCGAT
GTCGCGATTC TGGCAGCCCC GCCGCTGGCA ATGAACCTCC TCTCGCTGCG CCCGTTTCAG
ATCACGGTGC GTGAACAGTA TCAGGCGCTT GTCATTCCCG GTCTGATTCT GGCGGCGATT
ATCGGCGCGG CGCGGGTATG GTCGTGGTGG CAGGCGCGCA GTGAGCGGAC GCGCGGCGCT
CACGTTTCTG GCATTCAGGA ACGCCGAACA CGCTCGCGCC CGGCAGCAAT GTTCATGATC
GGCGCCATTG GCATTGCAGC GGTCACCAAT CTGGCATACC GCAATCCCGT CGCAACGACC
GTGCTCTACC GTGAGTCGCC GGAGCGTCTT GCGGCGATGG AGCGCCTGGC AGCGTTGATC
CCGCCCGATG CTCCGCTGGG GGTGACGTCG TTTCTGGCGC CGCGCATGAT GCCGCGTCGC
TTCATCTACT ATGTGCCGCC GGACGAGTCA TTTCCACCGC TCGAGCGCGC CGAGTATCTT
TTCATCGACA TGCGCGCTGC GGCGTTGCAC ACCGAACGCG ACCGCGACTT TATTCAGCGT
CTGCGCGAAT CGAGGCGCTG GCAGGTTATT GCCGAAGAGG AGGACCTGCT GGTGCTGCGC
CAGGCGCACC AGGCGCCGTA G
|
|---|
| Protein sequence | MSRHESLRGS SGKARVLHNL GCDINVAARK PSWIVWQGTS FAHMTQALAS QRERSNTWIA
HMLTAIERQA SLALAAFIML YVAVLFFGLT FKYFSWAQGY DQIDYQQSIW NTTQGRFLEI
SHYRHTDHLW GMDFIPAILL IVPFYALFPS ALTLNFFQAL FMALGALPIY GIARDRFDGS
RLAGLGWALV YLLYPSLWFV TMSAPWQPRT LAIPALLGAF FFLQRATFQR AGIREWGAYL
GLLALALTTR TDVSLVVVSF GILAALWRVG WRWALPPLMM GLAWFYLSTN VIVPSFYLPD
YQVREGEIGA VTEGDYTEVW PGKSPQLAYY SHLGDSAGAI LWTIVSRPID VLRLMFTPDK
LVYLALMLLP LALLPLLAPD VAILAAPPLA MNLLSLRPFQ ITVREQYQAL VIPGLILAAI
IGAARVWSWW QARSERTRGA HVSGIQERRT RSRPAAMFMI GAIGIAAVTN LAYRNPVATT
VLYRESPERL AAMERLAALI PPDAPLGVTS FLAPRMMPRR FIYYVPPDES FPPLERAEYL
FIDMRAAALH TERDRDFIQR LRESRRWQVI AEEEDLLVLR QAHQAP
|
|---|
| |