Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3732 |
Symbol | |
ID | 5541234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4889426 |
End bp | 4894894 |
Gene Length | 5469 bp |
Protein Length | 1822 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640895843 |
Product | parallel beta-helix repeat-containing protein |
Protein accession | YP_001433790 |
Protein GI | 156743661 |
COG category | [S] Function unknown |
COG ID | [COG1470] Predicted membrane protein |
TIGRFAM ID | [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00976047 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGACGCGCG CATACCGTCT GCTCTTCGTT CTTGCGCTGC TGGCGTTCTC CGTCGTTGCG CCGGCGCCGT CGGCGCTGGC GGCGACCTTC ACGGTCAATA GCACTGCCGA TGATCCCGAT GCCAGCCCCG GCAATGGCGT CTGCCAGACG GCGGGAGGTC AGTGTACGCT GCGCGCGGCG ATCCAGGAAG CCAATGCGCT GGCGGGACCC CATACCATTG CGTTCAATAT TCCGACTGCC GCGCCAGGTT ATGACGCAGC CGGGTTCTGG CGCATCCGGC CAGCAAGTGC GCTGCCGGGC ATCACCGCCG GAAATGTGAC CATCGATGGC AGAACGCAAC CGGCAGGAAA CCCCTCCTGG ACACATCCGC GCATCGTCAT CGATGGTTCG TTGATCACCG GCGGCGCGAA TGGTCTGACG ATCACGTCGT CGGGGAACAC CATCCGTCGC CTGACGATCC AGAACTTTGC GACCTCTGCA TCCGATCTTC TGGGGATAAC CGGCATCGGC ATTTTCATCC GCGATCCAGG CGCAACCAAC AATCGCATTC ATGGATGCTA CCTGGGCACG TCGCCGGACG GCAGCAGCGC CGCAGCGAAC CGTCTCGCCG GGGTGCAGAT CCGCAATGCA GGGAACAATA TCATCGGCAA CCCGACGGCG GGCGCCGGTC CCGATATCGA CACGGCCGGC GATAATGCGC TCGGCAACCT GATCTCCGGC AATGGTCAGA CTTTGCTCAT TGCCGCAAAT GTCTACCTGA CCGCTTCGTC TTATGACGAT GGGCGCGGCA ATGTGATCCG CGGCAACCTG ATCGGCACGA ACCTGGCGGG CAACGCCAAG ATTGGCAGCG ATCCGGGCAA TCAGCGGTAT GGCGTGCTGC TGTACCAGTA CCTGGACGAT ACCATCATCG ATGCCAACGT CATTTCCGGG CACGATGCCG TGCCTAACCC TTACGGCATC TACGTATTTG GCGACAGCGC TGCGAGCAGT CCGACCGATA CGGTGATCAG CGGCAATGTG ATCGGTACGA CAAAGGGGGG AACCTCAACG ACCCGCGTCC CCAATGGCGT CGGCATCTAC ATCGGCAGTG CAAGCAACAC GCTGATCGGC GGCGCGACCC CGGCGGCGCG CAATATCATC GCGGGCAATG GCGTCACGTC GCCGAATGGC CATGGCGTTC AACTGAGTTC GAGCAGGGTT TCTGGCACAA CCATTCAGGG CAACTATATC GGTTTGAATG CCAATGGCGC TTCGTTCGGG CGCAGCGGAA CCGACTCGCT GGGCAACCTG GGGCATGGCA TCTTTGTCGA GACCAATGCG CGCCAGACGA CCATCCGCGA CAATGTGATC TCGAACAATT TCGGGAACGG CATTCGCCTG TCGAGCGATG GTTCGGTCGT TGTCGGCAAT CGCATCGGGG TCAACACTGC GTCGCCGCCG ATCTCCGACG ATACCTTTGC GAATGGTCAG GCGAGCATCT GGATCAGCCG CGGCACAACG TCCAGCGCGT CGCCGGGGAA CCGGATCGGC GGCACGAATC CAGGCGATGC CAATGTTATC GCTTATGGGC TGGGATCGAC GCCGGTTGCG GTCCAGATTC GCTCCGATGG CACGCCAAAT ACATCGAACA ATGAGGTCAT CGGTAATTTT ATCGGTGTGG CGCCGACGGG CGATGCCTTG CGTGGCAGTC CATCAACAAG TTCGATTGGC GTATACGTCG TTGGCGCCAG CTCGTTGCGC GCCGACAACA ATCGCATTAT CGGCAACACC ATTGGCGGAT TGGGCACAGG CATCCAGATA GAGTCATCGT TTACAACCGG CAATGAGGTC AGCGCCAATA CGATTGGTCT TGCCGGCGCC GGCAACCGAT ATGGCGTCTG GCTGTTTCAG ACGAGCGGCC ATACCATCGG TGGCGCCGGT GGCGTCGGCG TGAATGCCAC ACGCAACATC ATTGCCAACA ATACCCTGCA CGGCGTTTTG GTGGGCATGA ATTCGAACGG CAACACATTG TTGCGCAACC TGGCGCGCAA CAATGGCGGC GCATCCGGCG GGCACGGGGT GATGGTCGAC GCGACTGTCA GCCAAGTGCG TATCTCTGGG ACGGAAACGA GCGAGAACAA CGGGAAGGGG ATCAACCGCG CCGGCAGCCC GCCGCAACCG CCGACAATTG TCGGCATTAC CGGCGGCAGC CCGCCAACCC TTCAGGTGCA GGTTCCGGCC GGCGCCAACT GTGGCGCCAG CGGGTGCCGC GTCGAGGTGT TTACCAGCCC CACCCGCGAC GACGCCGAAG GTCCGCGCTA TCTGGCATTC CTCGACGGCG CCGCAGCCGG CGCTACGGTC AATGTGCCTG TGCCCGACTG CGACCGCTTC TTCTCGGCGA CGGTGACCGA TCAGACCAAC AATACCTCGG AATTTACGCC GACGATGTTC GAGGCGCCGT TCAGTTGTCA GACCGACTTC ATCCTTGCGC AGACCGGACG CACTCCGCCG GGAAGCGGAC CGGTCAATCC GGGCACGATT GTGACTTACA CCTATACGGT GACGAACACC GGCGCCTCGC CGATTGTGGT TACCATCTCG CGCACCGACT CAACCGGTTG GGCGTCGACG CCGTCGCCGG CGACCCTCAA TCTGAATGCC GGGGCGTCGG GGACGTTCAC GATCTCTGTC GCAGTGCCCT CGAATGCGCT GGCGGGAAAT TACACCTTCA GCGTGACGGC GCAGGTTGGC GCGACGCAGC GCACGCTCAA CACCACCACA ACGGTGGCGC AGGTGTATGG TGTGGCGATT GCGCCGACCA GCCAGACCGC TACGTTCGCC CGACCGCAGG TGATTACATT TACCCATGCG ATCACCAATA CCGGCAATGG ACCGGATACG ATTGTGGTCA CAGCCGCAGT GTCGCCGAAT GATGGCGCGA CGGTCAGCGT CATAGGCGGG AATTGTGTCA GTCTGGCGGC ATTCTCGTCG TGTACGCGGC AGGTTCAGTT GACCATCCCT GTCGGTCCTG GCGCGTCGCT CTACACGGTG ACGGTCACTG TGAGTTCGAG TGGCAATCCG GCGATTCAGG CGACGGCGAC CGATACGGCG TCGGCGGGCG CTGTGCCGCA GATCGCCCCC GCTTCGCAAC TGAAGGAAGG ATTGCCCGGC GAGACGGTCA CGTTCACGCA CACGGTGACG AACATCGGTC AGAGTGACGG AACCTTCACA CCGTCGCTCA CGCTGTCGCA GGGCAGCCCG TGGAGTGGAA GCCTGACCGA TCCGTCGTCC TTCACTCTGA ACCCCAACGA CTCGCGAGTG GTCACACTGA CCGTGACTGT GCCGAACACG CCGATTCCCG ATGCGGGCAC GCTGGTCACG GCGACCCTGA CGGTGCAGGC AAGCGGTGGG GCATCAGCGG CGGCTGCGAG CATCACGCGC GTTGGGCTGG TTCCAGGCTT TACCCTGAGT GCAGCGACCG TGCCGACGCT CAATCTGCCG CCGGGCGCTA CGGCAGTCTT TACCCACACG TTGACCAATA CCGGCAATGG GTTGGATACA TTCGTGGTGA CAGCGACGTT GAGCAGCGGT CTGGAAAACC TGACGGTGAC GCCGTCCGGT CCGTTCTCGT TGGCGCGCGG CGCATCGCAG CAGGTGGTGG TGCAGGCGCG GGTGCGCGAT GGGCAGGCGG TCGGAACTGA ACAGATTCAA GTGACTGGTG CGCGTGTTGG GGGTGGTGTA CCGTCGCAAA CGCAGACGGA TACGGTGAAC GTGCAGGCGG CGCCGGGAGT GCGCCTCTCT CCCGGTCAGA CGGAGAATAT CACGCCGCCA GGAAGCGTGA CCTTTACCCA CGTGTTGACG AACGTTGGCA ACGTGGCGGG CAACTTCAGC GTGAGTGCGA GCGGTCTGCC GGCTGGCTGG AGCGTCGCCG GTCCGACGAA CCTGTTTCCG GCGAACTGCC TGACGGGTCT GGCGGCTGGC GCGACGTGTC GCTTCGATCT GACAGTCACC ACGCCGTTGC AGTTGCCGCA GGTTCCGGCG GGCGTCTATC CATTCCAGGT GCAGGCGAGC ACTACCAGCG TATCGGATGC CGTGACCGAT ACGGTGAATG TCCTGGCTGT CCCGCAGTTT GCGTTCACGG CGGATGAGAG TGGCAGCGGC GCGCCCGACA CGGTGATAAC CTTCACGCAT CGACTGACGA ACACCGGCAA CGTGACCGAC ACCTACACCT TCAGCATAGC GGTGAGCGGC GGCGGTTTCA GCGCCGACCC GCCGGCGACG GTTGCCGCTG TGCCGCCAGG AGAGGGGCGG CTTGTGCCGT TTGCAGTGCG CATTCCGCCG GCTGCACCTG CCGGAACGAC CGGTGTCATC ACGCTGATGG CGACCTCGGC GCAGGGTGCG CCATCGCAGA GCGTCAGCGA TACGGTGACC GTCAATGAAG CCGACAACGC GCGCCTCGAA GTGGTCGGTC CGGCGCAGCA GACGGTGTTT ACGAGCGGTG CGCCAGCGGT TGCAATCTAC ACGCTGAATC TGTTCAATAC CGGCAACACG ACGATCAGTT ACACCCTGCG CCTGAACCCG GCGAGCCTGA CCGGTGGATG GACTGCTGGC GTCGCGCCGA CACTCACAGC GGTACTGCCG CCGAGCGCAA CGGCGCCGAC GCCGCTAACC GTGCAGGTCA GCGTGCCCGC CGATGTTGTC GGAACGCAGG CGGTGACGGT CGAGGCGTTG CGCGGCGATG GCGCCGGTCC GGTGCTGGCG GCGGAGACGC TCACCACAAC TGCGCAGTTG ATCGCAACCG GCGATCTGCT GACGCCGCCG GAGAATCAGG GGTTTGGTCT GCCTGGCGAA ACGGTGGTCT ATACCCACAC GCTGCGCAAT GTGCGTTCGG TGGCGGATAC GTTTGTCTTC AGCGCGCTCG TTCCGCTGGG ATATGAGGTG ACTCTGCCGC CTGCGACGTT CCTGTCGCCT GGTGAAGAGC GCGAGGTCAG TGTCAGTATT CGCATTCCAA GCGGCGTCTT CTCCAATACC GTCGATGCGA TGCGCCTGAG CGTGCAGTCG GTCTCCGACC CGAATGTGGC AGCGGATGCA CGCGAGTATA CAACCATTCG CCAGGTGGTG AGTGCGGTCA TGTCGCCCGA ATATGTCCGC GTCGTGCAGG CAGGGGATCA GGTGCAGTTG ACCCATCAGT TGCTCAACAC CGGCAATACG ACTGACACCT TTGTGCTGAC CTTCACTCAA ACGCTGCCGT GGAATGTCGT GCTGCGACCC TCGCTGCGCA CGCTGGGACC GAACCAGCAG GCGCCGTTCA TTACGCTGGA TGTGAGCGTA CCGGCAAATG CGCCGTCGGG ATCGGTCAAC CGCATCCGGG TGCGGGCGCA ATCGCAGAGC GATCCGACGA AGGTGTTCGA GGTCGAGAAC CTGTTCGTCA TTCCGGTGGC GCTGCCGCAA GTGACGTATG AGGTCTATCT GCCGCTGGTG AAGCGATGA
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Protein sequence | MTRAYRLLFV LALLAFSVVA PAPSALAATF TVNSTADDPD ASPGNGVCQT AGGQCTLRAA IQEANALAGP HTIAFNIPTA APGYDAAGFW RIRPASALPG ITAGNVTIDG RTQPAGNPSW THPRIVIDGS LITGGANGLT ITSSGNTIRR LTIQNFATSA SDLLGITGIG IFIRDPGATN NRIHGCYLGT SPDGSSAAAN RLAGVQIRNA GNNIIGNPTA GAGPDIDTAG DNALGNLISG NGQTLLIAAN VYLTASSYDD GRGNVIRGNL IGTNLAGNAK IGSDPGNQRY GVLLYQYLDD TIIDANVISG HDAVPNPYGI YVFGDSAASS PTDTVISGNV IGTTKGGTST TRVPNGVGIY IGSASNTLIG GATPAARNII AGNGVTSPNG HGVQLSSSRV SGTTIQGNYI GLNANGASFG RSGTDSLGNL GHGIFVETNA RQTTIRDNVI SNNFGNGIRL SSDGSVVVGN RIGVNTASPP ISDDTFANGQ ASIWISRGTT SSASPGNRIG GTNPGDANVI AYGLGSTPVA VQIRSDGTPN TSNNEVIGNF IGVAPTGDAL RGSPSTSSIG VYVVGASSLR ADNNRIIGNT IGGLGTGIQI ESSFTTGNEV SANTIGLAGA GNRYGVWLFQ TSGHTIGGAG GVGVNATRNI IANNTLHGVL VGMNSNGNTL LRNLARNNGG ASGGHGVMVD ATVSQVRISG TETSENNGKG INRAGSPPQP PTIVGITGGS PPTLQVQVPA GANCGASGCR VEVFTSPTRD DAEGPRYLAF LDGAAAGATV NVPVPDCDRF FSATVTDQTN NTSEFTPTMF EAPFSCQTDF ILAQTGRTPP GSGPVNPGTI VTYTYTVTNT GASPIVVTIS RTDSTGWAST PSPATLNLNA GASGTFTISV AVPSNALAGN YTFSVTAQVG ATQRTLNTTT TVAQVYGVAI APTSQTATFA RPQVITFTHA ITNTGNGPDT IVVTAAVSPN DGATVSVIGG NCVSLAAFSS CTRQVQLTIP VGPGASLYTV TVTVSSSGNP AIQATATDTA SAGAVPQIAP ASQLKEGLPG ETVTFTHTVT NIGQSDGTFT PSLTLSQGSP WSGSLTDPSS FTLNPNDSRV VTLTVTVPNT PIPDAGTLVT ATLTVQASGG ASAAAASITR VGLVPGFTLS AATVPTLNLP PGATAVFTHT LTNTGNGLDT FVVTATLSSG LENLTVTPSG PFSLARGASQ QVVVQARVRD GQAVGTEQIQ VTGARVGGGV PSQTQTDTVN VQAAPGVRLS PGQTENITPP GSVTFTHVLT NVGNVAGNFS VSASGLPAGW SVAGPTNLFP ANCLTGLAAG ATCRFDLTVT TPLQLPQVPA GVYPFQVQAS TTSVSDAVTD TVNVLAVPQF AFTADESGSG APDTVITFTH RLTNTGNVTD TYTFSIAVSG GGFSADPPAT VAAVPPGEGR LVPFAVRIPP AAPAGTTGVI TLMATSAQGA PSQSVSDTVT VNEADNARLE VVGPAQQTVF TSGAPAVAIY TLNLFNTGNT TISYTLRLNP ASLTGGWTAG VAPTLTAVLP PSATAPTPLT VQVSVPADVV GTQAVTVEAL RGDGAGPVLA AETLTTTAQL IATGDLLTPP ENQGFGLPGE TVVYTHTLRN VRSVADTFVF SALVPLGYEV TLPPATFLSP GEEREVSVSI RIPSGVFSNT VDAMRLSVQS VSDPNVAADA REYTTIRQVV SAVMSPEYVR VVQAGDQVQL THQLLNTGNT TDTFVLTFTQ TLPWNVVLRP SLRTLGPNQQ APFITLDVSV PANAPSGSVN RIRVRAQSQS DPTKVFEVEN LFVIPVALPQ VTYEVYLPLV KR
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