Gene Rcas_3513 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3513 
Symbol 
ID5541012 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4579225 
End bp4579701 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content59% 
IMG OID640895631 
Producthypothetical protein 
Protein accessionYP_001433581 
Protein GI156743452 
COG category[R] General function prediction only 
COG ID[COG1661] Predicted DNA-binding protein with PD1-like DNA-binding motif 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGGTCG TCGCACATCA AGAGGCAGTT CCACGCCATC GGGTCCTGGC GGTCGTCCTA 
TGCGATGGCG CCGATCTGCA CCAGGCGCTG ACTGAAATTG CAATGACGCA TCACATCACC
GCAGCAATCG TCCACATGCT CGGTGGGTTG CGCGAGGTTG CGCTTGTCGA AACCGATGTT
GCCACCGGGC TAAAAAAGCC GCCGCTTGTA TTTCGCCGTC ACCTTGAAAT TATCGGCGGC
AGTGGCATGA TAAGCCTGCA CAACCAAACA CCGCACATCC ATCTGCACCT TACTCTTGCC
TATCAAGACG CGGAACACCT GCACGGCGTC ACCGTGATTG GCGGTCATGT CGCGTATGCA
ACGGCCCATG CGGTCGAAGC GCTCATTCAT TGTTACGATG GCCTGGCGCT GATCCGCCAA
CCTGATCGGC GCACCGGCTT GCCGCTCTGG AGTTTGACCG CTGGCGCTTG TTCGTGA
 
Protein sequence
MPVVAHQEAV PRHRVLAVVL CDGADLHQAL TEIAMTHHIT AAIVHMLGGL REVALVETDV 
ATGLKKPPLV FRRHLEIIGG SGMISLHNQT PHIHLHLTLA YQDAEHLHGV TVIGGHVAYA
TAHAVEALIH CYDGLALIRQ PDRRTGLPLW SLTAGACS