| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2450 |
|---|
| Symbol | |
|---|
| ID | 5539931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3147562 |
|---|
| End bp | 3149334 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640894580 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001432548 |
|---|
| Protein GI | 156742419 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1032] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.271447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGTGA TGCTCTTGTT TCCGCCAAAC TGGACGCCGG CAATGCCGCA CCTGGCGCTG
CCAACGCTCA CCGCATTTCT TCGTGGGCAT GGGCTGCGGG TCACGCAACG CGACTTGAAT
ATCGAAGTGT TCGAGACGAT ACTGACCCGG CGTTATATCG AGCGGATGCT CGACCGCCTG
CGGCGTGAAT ACGGACCTCA CGGCGAGCGG CGCTCGACAC GCCGGGTTGC GCCGCCACGC
GATCTGGTCG TACAGGCGTT GCGTTCAGGT CCGGCAATTG CGGCACGAGT CGAGCGCGCT
AAAAAGGTCT TGCGCAGCCC TGCGTTTTTC GATGGTCCGG TCGGTCGAGA CGCGCTGATG
ACGGTCGTCG ATGCGCTTCA AATTGCATCA CTGCCATTCT TCCCCGCAGC GCTCGAATTT
GGAACGTATC GTCCAGCGCG CACGGCCGAC AGCACCCGCG CTATCTTGAG CGAAGTGCGC
GATCCGCAGG TCAATATGCT GATCGATATC TTTGCGCGTG GCGTCCTGGC GGATATCGAA
CGTGAACGAC CGGATGTGGT CGGCATTTCC ATCCCCTCGA TGGCGCAGAT GGTTCCAGGG
TTGACAATTG CGGCGCTGAT CAAGGATCGC GGATTGCCAT GTCATGTGAC GGTCGGCGGT
CCGCATATCA CGATGCTGCG TGAGCGCCTG GCACGATCAC CTGGCATCTT TTCTCTGATC
GATAGCGCCG TCGTCTTCGA TGGCGAGGTT CCGCTCGTGC AGTTGTGCGA AGCGCTCGCC
GGCAGTGGCG ATGTCTCGCG CGTGCCGAAC CTGATCTATC GCGACGGCAA TGCCATTCGG
GTAACAGCGC GCAAGGAACC GGAAAAGATC GGCGCCTTGC CGCTGCCGGA TTTCGATGGC
TTGCCGCTCG ACCGGTACCT GGCGCCGTAT CTGACGTTGC CGCTCCTCTC GGCGCGTGGC
TGCTACTTTG GCAAATGCGC CTTCTGTAAT GTCGGCTATG GCGAAGCCGA GAATTTCAGC
CTGATGCGCA GCGAGATGCT GGCGGAGCAG ATGGTCGCGC TCCACCAGCG CTATGGCGCG
CAGCACATCT TTTTCGCCGA TGAGGCGCTG ACACCACGCA CGTTGCGCGA ACTCTCCATG
ATTGTGCAGC GCGACTGTAT TCCGGTGCTT TGGGGCGGCT GCGCGCGTTT TGAGAAGACG
CTGACCGCCG ACCTGTTGCA ACAGATGTAT CGCGGCGGGT GCCGCATGAT CCTGTTTGGT
CTGGAAAGCG CTTCCGAAGC GATCATGAAC CGCATGGTCA AAGGGACAAA ACTCGAGCAT
ATGCATCGCA TCCTGCGTGA AAGCGCCGAA GCAGGCATCT GGAACCATAC ATTCTTTTTC
TTTGGCTTTC CTGGCGAAAC ACTCGATGAC GCGCAGCAAA CGGTCAATTT TCTCTATGAG
CATCGAGAGC ATATTCATTC AGCTGCGCTA GGGACGTTTC TGCTCGAAAG AGATGCGCCC
GCGCACCGAT TTCCTGAAAG TTTTGGCATT ACGAAGGTGA TCGATCCGCC AGATAAGGAC
CTGGCGATCT ATTTCGATTA TGAGGTTGCC GAGGGAATGG ATGCAGCCAT GGCAGAACTG
GTCGAGTCAC GCTTCCTGGA AACGATGCCG GTCAAAGCAT TTCCACAGTT CTATATCAAC
GATGTCTATC GTTTTCTCTA CGCCTGTCAC CTGAGCCATC AGGGCGCACC GTTGCCGCCG
CTGCTCGCGC AGCAGGATGC GGTCGCCGCC TGA
|
|---|
| Protein sequence | MHVMLLFPPN WTPAMPHLAL PTLTAFLRGH GLRVTQRDLN IEVFETILTR RYIERMLDRL
RREYGPHGER RSTRRVAPPR DLVVQALRSG PAIAARVERA KKVLRSPAFF DGPVGRDALM
TVVDALQIAS LPFFPAALEF GTYRPARTAD STRAILSEVR DPQVNMLIDI FARGVLADIE
RERPDVVGIS IPSMAQMVPG LTIAALIKDR GLPCHVTVGG PHITMLRERL ARSPGIFSLI
DSAVVFDGEV PLVQLCEALA GSGDVSRVPN LIYRDGNAIR VTARKEPEKI GALPLPDFDG
LPLDRYLAPY LTLPLLSARG CYFGKCAFCN VGYGEAENFS LMRSEMLAEQ MVALHQRYGA
QHIFFADEAL TPRTLRELSM IVQRDCIPVL WGGCARFEKT LTADLLQQMY RGGCRMILFG
LESASEAIMN RMVKGTKLEH MHRILRESAE AGIWNHTFFF FGFPGETLDD AQQTVNFLYE
HREHIHSAAL GTFLLERDAP AHRFPESFGI TKVIDPPDKD LAIYFDYEVA EGMDAAMAEL
VESRFLETMP VKAFPQFYIN DVYRFLYACH LSHQGAPLPP LLAQQDAVAA
|
|---|
| |