| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2327 |
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| Symbol | |
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| ID | 5539808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3000323 |
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| End bp | 3004528 |
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| Gene Length | 4206 bp |
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| Protein Length | 1401 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640894460 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001432428 |
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| Protein GI | 156742299 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.775797 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.294215 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCACC ATCGTCATCG TCGCGGGACC GTGCTGTTGG CGCTGATCGG CATGCTGCTC
ACGGTCGTTG CACTCCCCGG CGCGCTACCC GTCGCGCGCG CCTCCGACAC CCCTGATCCG
TCGTCCGTTA CCATTGCCGG AAGTTTTCAA AGCGAACTGG GTTGTCCAGG CGACTGGCAG
CCGGAATGCG CCATCACCCG CCTGGTCTAC GATGCCGCCG ATCAGGTCTG GCAGGCGACG
TTCACCATCC CTGCCGGAAC CTGGGAGTAC AAAGCCGCGC TGAATGGGTC GTGGGACGAA
AACTATGGCG CGAATGCGCA ACGCAACGGC GCGAATATTC CGCTCACGCT GAGTGCTGCG
GCATCCGTCA GGTTCTACTA CGACCATGAG ACGCACTGGG TTGTCAGCGA CCGCAACACG
CGCATTGTGA CGGCGCCGGG CAATTACCAG AGCGAATTGG GTTGCCCGGG CGACTGGCAG
CCCGATTGTT TGCGCTCCTG GTTGCAAGAC CCGAACGGCG ACGAGGTGTT CGTCAGAACC
GTCACCGGAC TGCCTGCCGG AAACTATGAG TTCAAGATTG CCATTCATGA GAGTTGGAGC
GAAAATTATG GCGCCGGCGG CGCACCCGGC GGCGCGAACA TCCCCTTCAC CGTGCCTGCG
CCCGGCTATC GGGTGACGTT TACCTTCGTC TCTGCGACGA ACACTCCTTC CGTTGCGGTC
GTCAGCGCCG GAGCACAGCC GGATAACAAT GTCGAATGGG ACGGGGTGCG CCACGACTCG
CGCGACCCGC TCTACCGCGC GCCGGGAGGG GCGGTTCCAG CCGGGACGCC GGTCACCATC
CGCCTCCGAA CGTTCCACAA TGATGTCACG TCGGTGCGGC TGCGGGTATA CGACTTGAAT
GCCAGCACGC AGCGTTTCTA CGACATGGCG CCGGCCGCGA CCGATGTAGA CTGCTATGAG
GCGAGTCTGG CGGGCAAGAC ATGCGATTTC TGGGAGGTGA TGCTCACTCA GGCAGCGCCG
AATAACCTGT GGTATCGCTT CATTGTTACC GACGGAACCG ACACCGACTA CTACGACGAC
AATACCCCGG CGCTCGATGG CGGTTTAGGC GCGATGACCG ATGAGCAGGA AGATCACAGC
TGGGCGCTGA TGTTCTACGA TCCGGCGTTT ACTGTGCCGG AGTGGGCGAC GAGTGCGGTG
ATCTACCAGA TTTTCCCGGA TCGCTTCCGC AACGGCGACC CGCGCAACGA TCCGCGCACC
GGCGATAGCC GGTATGACGA CCCGGTTATC GCGTTGCCGT GGGGTGAACT GCCCGAAGGG
CACTGCCGCA ACTACAGCGA TGCTGCGACG AATTGCCCCT GGCGCTTCGA CGATACACCG
CCCTCCTGGA GTCCGACGAA GGAGGGTCCG CGCGGACGGG ACTACTACGG CGGCGACCTG
CGTGGTGTGA TCAGTCGCCT TGACTATCTC AAGAACCTGG GTGTGACGGT CATCTATTTC
AACCCGATCT TCCACGCGAA ATCGAACCAC CGCTACGATA CCTACGACTA CTTCCGCATC
GACCCGGCGC TCGGCACACT CGCCGACTTC CGGCGTCTGG TGCGCGAAGC GGAGCGGCGC
GGCATTCGTG TGATCGTCGA TAGCGTGTTT AATCATATGT CGTCGGACAG CCCACAGTTC
GACCGTTACG GATACTACGC CTCGCTCGGC GCATGTGAAT CGGCCGCATC GCCCTACCGC
GACTGGTTCC GCTTCCGTCG TCCCGGACCG GGCGAGCCGT CGCCGTGCGC TCCCTCGACA
CCCGGCGGCG ATGACACGTA CTATGTCGGA TGGTTCGGGT TCGACAGCAT TCCCGAAATT
CGCAAGGAAC ATCCGGCAGT GCTGAACTAT TTCGTGACCG GATCGAACAG TGTGTCGCGC
TACTGGCTGC GCCAGGGTGC GAGCGGCTGG CGCCTCGACG TAATGGGTGA CCCGTCGTTC
CCGCCCGATT ACTGGCCCAC GTTCCGCCGC GTTGTGCGCG AGACGCGCCA CGATGCGCTG
ATCATCGGCG AACTGTGGCA GAAGGACAGC ACATTGCTGC GGCACCTGCG CGGCGACACA
GCGGACACAA CGATGAATTA CCGCCTGCGC GATGCGATCA TTGGGCTGCT GACGCCGGGA
CCGTTCGACT CGAAGGGGTT CGCCGACAGT GGACGCCCGA TTGCGCCGTC GGAATTCGCT
CATCGCATCA GTTCCATCCG CGAAGACTAT CCCGACGCCG CGTATCTGAC GTTGATGAAC
CTGGTGGGCA GCCACGACAC CGAGCGCATT CTGTGGACGC TGACGCCAGG CGCCGAGACG
CGCGCCGACA AGGAGTTCAA CGCCGCCAAT CTGGCGAACG GCAAGCAGCG GCTGCGTATT
GCGTCGCTCA TTCAGTTCAC CATGCCCGGC GCGCCAACGA TCTACTACGG CGATGAAGTC
GGTGTCACCG GCGATGACGA TCCCGACGAC CGACGCACGT ATCCGTGGGT CGAGACCGGC
GGCAACCCGG ATCGGGCGCT GCTGCGCCAC TACCGCGATC TGGCGCGCAT TCGCCATCAT
TACCGTTCGC TGCGCGCCGG CGATCTGCGC TTCCTGCTGG CAGACGATAC CGCCGGCACG
GTGGCGTATT CGCGCATCAG TGGCGACGAT GCGGCCATTG TTGCCATCAA CCGCAGTTCG
CAGCCACGCA CCGTTGACAT TCCGGTTTCC GGCGTCATTC CTGACGGCAC AGCGTTCTTC
CCCTCCTACT GCGTTGCCAA TGACCAGTTG AAGGACTGGC TGCATGTCGA GAACGGTCGG
CTACGGGTGA CGCTCAACCC GATGAGCGCT GTGCTGCTGA CCAGTTACCT GGCGGATCTG
ACGCCGCCGG CGTCTCCGGC AAACCTGTGG GTGACGGACG AGGGCGACGG GCAGGTGAGC
CTGACGTGGA ACGGCGTTCC CGGCGCTGCG GGGTACAACC TCTATCGCAG CCCATTGAGC
GGCGGCGGGT TCGTGAAGGT CAACGACGCG CCGCTGACGG CGATTGTCTA CACCGACACA
GGGTTGCGCA ACGCGCGCGA CTACTTCTAT GTCGTGACTG CGGTCGATGA GAAAGGGAAC
GAAAGCGCCG TCTCGAACGA AGTGCGCGCT ATGCCGCGCC TCCAGATCGG ATGGGCGAAC
CTGCAATGGC CCCCATCGAT CACCCACACC ATCAGCGCCA TCAACCGCAC CCCGCTGATC
TTCGGTCAGG TCTGGATCAA CGGCGTTACC AACCGTCCGG GAGCAACGGA AGGGCTGCGC
GCGCAACTCG GCTACGGACC ACGCGACAGC GACCCGGCGG GCAACCCCGC CTGGACGTGG
ATCGAGGCGG AGTTCAATGT CGATGCCGGC AACAACGATG AATTCAAAGC CAGCCTGCTG
CCGGATCAGA CCGGTGCGTT CGATTATGCC TATCGCTACA GCACAACGAA CGGGCGCTCC
TGGGTCTATG CCGATCTTGA CGGCATCGGC AACGGCTACA CCCCATCGCA GGCAGGCAAA
CTGACGGTTG TCGCCAGTAG TGACACCACC CCGCCGGTGG TCCCGACCGG ACTGACGGTG
GTGACCGCCT CGCCGACCGG CATTGCGCTG CGCTGGAACG CAGTCACCGG CGACCCGACG
CTCTACGGCT ACGAAGTGCG GCGCAGCAGC GTCTCCGGCG GACCGTACAC CACGATTGCG
ACGATCACCG GCGCGGAGTA CACCGACACG TCGATCATCC AAGGGGCGAC CTACTACTAC
GTCGTGCGCG CGGTGGACAC ATCGTTCAAC CGGTCCGGCG AATCCGCCGA AGTTGCGGCG
ACTGCCGAGT TGCGGACGGT GAGCGTTACC TTCACCGTGA CCGTTCCGGC AACGACACCG
GCAGGCAGCA CAGTCTATAT CGCCGGGTTC CTTGATCGAC TCGACGGCAA CCTGCCGCAG
TGGAACCCCG GCGGCGTCGC GCTGACGCAG ATCGGACCGA ACCGGTGGTC GATCACGCTC
ACCGGCAAGG AAACAACCCA GATCGAGTAC AAGTACACCC TGGGTTCGTG GGATTACGTC
GAAAAGGGTG CGGCGTGCGA CGAGATCGCC AATCGCCAGT TGACCCTGAG TTACGGCGTG
GATGGCACGC AAGTCGTGAA CGACAGCGTA CCGAACTGGC GCAATGTGGC GCCGTGCGGG
AATTGA
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| Protein sequence | MSHHRHRRGT VLLALIGMLL TVVALPGALP VARASDTPDP SSVTIAGSFQ SELGCPGDWQ
PECAITRLVY DAADQVWQAT FTIPAGTWEY KAALNGSWDE NYGANAQRNG ANIPLTLSAA
ASVRFYYDHE THWVVSDRNT RIVTAPGNYQ SELGCPGDWQ PDCLRSWLQD PNGDEVFVRT
VTGLPAGNYE FKIAIHESWS ENYGAGGAPG GANIPFTVPA PGYRVTFTFV SATNTPSVAV
VSAGAQPDNN VEWDGVRHDS RDPLYRAPGG AVPAGTPVTI RLRTFHNDVT SVRLRVYDLN
ASTQRFYDMA PAATDVDCYE ASLAGKTCDF WEVMLTQAAP NNLWYRFIVT DGTDTDYYDD
NTPALDGGLG AMTDEQEDHS WALMFYDPAF TVPEWATSAV IYQIFPDRFR NGDPRNDPRT
GDSRYDDPVI ALPWGELPEG HCRNYSDAAT NCPWRFDDTP PSWSPTKEGP RGRDYYGGDL
RGVISRLDYL KNLGVTVIYF NPIFHAKSNH RYDTYDYFRI DPALGTLADF RRLVREAERR
GIRVIVDSVF NHMSSDSPQF DRYGYYASLG ACESAASPYR DWFRFRRPGP GEPSPCAPST
PGGDDTYYVG WFGFDSIPEI RKEHPAVLNY FVTGSNSVSR YWLRQGASGW RLDVMGDPSF
PPDYWPTFRR VVRETRHDAL IIGELWQKDS TLLRHLRGDT ADTTMNYRLR DAIIGLLTPG
PFDSKGFADS GRPIAPSEFA HRISSIREDY PDAAYLTLMN LVGSHDTERI LWTLTPGAET
RADKEFNAAN LANGKQRLRI ASLIQFTMPG APTIYYGDEV GVTGDDDPDD RRTYPWVETG
GNPDRALLRH YRDLARIRHH YRSLRAGDLR FLLADDTAGT VAYSRISGDD AAIVAINRSS
QPRTVDIPVS GVIPDGTAFF PSYCVANDQL KDWLHVENGR LRVTLNPMSA VLLTSYLADL
TPPASPANLW VTDEGDGQVS LTWNGVPGAA GYNLYRSPLS GGGFVKVNDA PLTAIVYTDT
GLRNARDYFY VVTAVDEKGN ESAVSNEVRA MPRLQIGWAN LQWPPSITHT ISAINRTPLI
FGQVWINGVT NRPGATEGLR AQLGYGPRDS DPAGNPAWTW IEAEFNVDAG NNDEFKASLL
PDQTGAFDYA YRYSTTNGRS WVYADLDGIG NGYTPSQAGK LTVVASSDTT PPVVPTGLTV
VTASPTGIAL RWNAVTGDPT LYGYEVRRSS VSGGPYTTIA TITGAEYTDT SIIQGATYYY
VVRAVDTSFN RSGESAEVAA TAELRTVSVT FTVTVPATTP AGSTVYIAGF LDRLDGNLPQ
WNPGGVALTQ IGPNRWSITL TGKETTQIEY KYTLGSWDYV EKGAACDEIA NRQLTLSYGV
DGTQVVNDSV PNWRNVAPCG N
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