| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1981 |
|---|
| Symbol | |
|---|
| ID | 5539459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2537003 |
|---|
| End bp | 2538433 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640894116 |
|---|
| Product | CRISPR-associated RAMP Csm5 family protein |
|---|
| Protein accession | YP_001432087 |
|---|
| Protein GI | 156741958 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1332] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR01899] CRISPR-associated RAMP protein, Csm5 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.244308 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTGG TGCGCAACCA GGTCGTTTCC CTGACCGTCA CTACCATCAC GCCGCTCCAC
ATCGGCACAG GCGACCGGCT GGCGGCAAAC CTGGATTACT ATGTGGACGG CGACGCCACG
CTGGTGATCA ATGCTGACGC TGCGCTCGAA TTGGTGGTCG AAACCTGGCA GCAGCGCCGC
GTGCCGTATG AGGAGCAACT GCGGCGCTTC AACGCAGAAC TGGCGCAGGA AGAAGAACGC
ATCCGCCGGG CGGACGAGCG TCTGCGTCGT CAGATTGAGC AGTTCGAGGA GAGTCCGCCG
CGGCGCAAGG ACGAGTATGA ACGTCAGGCG AACCGTTTTC GTGAGGAGGC GCAGCGTCTG
AAGGAACGCA AGCAGCGCCT GGCGGAGCAC AGCGCGAATC CGCCGCAGCC GGACGATACC
GGCGATCTGT TGCCGCCGGA ATTGATCGCC GGCAGCACGT TCGACCAACT GGTTGATGGC
GGGTTGTTGC CACGCGACCG GTTGCGTGAA CGCGCAACGG TCAACGGGCG TCCGCTGGTG
CGCTATGCGC TGAACGGACG CCCGGCGTCC GGCGAGGTCT ACGAGCAGAT TAAGGATGTC
GCCGACCGAC TCTATCTGCC GGGGTCGTCG CTCAAAGGCG CAATCCGCAG CGCGCTGGCG
TGGGACATGG CGCACAGTCC GGCGGTCGCG GCGCTTCAAC ATGCGGTGAA GGGGGGGCCG
AAAAACGCTG ATGACGCCAT CGAACAGGAG GTGTTTCTCG GCACGCTGCG AACGCAACGC
CGTATCAACA ACACGGTGCG TGACGTGCTG CGCGCGCTCC GCATCGGTGA CAGCGCGCCG
GTCGCAGTTG CGCCCGATCT GCTGGCGGTG CGCATCTACC GCAGCCGGTC GGCGCAGGGA
TTGATTGCGC TCGAAGCCAT CCCCGTCGAT GTCGAGTTTC GCGCAGCGCT TCAGATCGAA
CAGTATCCGT TCGAGAGCGG GGTCGCGCGC GCCGTGATCG ACTTCGGCGA TTGGCAGCGC
CGGTTGCAGC CGGATGAACT TGCGGCAGCG TGCCGACGGC GCGCCGGGCG CCTGATCGAC
GGCGAACTCG CATATTTCAA CCGCCAGACC GACGCCGCCG AACTGGTCCG CTTCTATGCC
GATCTGCGCG CGCGCCTGGA AAGGATGGAT GCGCGCGCGT TTCTGTTGCC CATCGGCTGG
GGCGCCGGTT GGCGCTCCAA GACCCTCGAC GACCGGTTGC GCCAGGGGAC GGATCGTGAC
AATGCGTTTG CGCAAATCGT TCAACGTCAC ACCCTCAAAA AGCACAAATC CGCCGGTTTT
CGCCCCGGCG ACGCTTTCCC GGAGACGCGC AAAGTCATCA TGCGCGGCGC ATTACCCTGG
CGACCGCTTG GGTGGGTCGA GGCGCGCTTC GATCTGAACG GTGAACGTTG A
|
|---|
| Protein sequence | MALVRNQVVS LTVTTITPLH IGTGDRLAAN LDYYVDGDAT LVINADAALE LVVETWQQRR
VPYEEQLRRF NAELAQEEER IRRADERLRR QIEQFEESPP RRKDEYERQA NRFREEAQRL
KERKQRLAEH SANPPQPDDT GDLLPPELIA GSTFDQLVDG GLLPRDRLRE RATVNGRPLV
RYALNGRPAS GEVYEQIKDV ADRLYLPGSS LKGAIRSALA WDMAHSPAVA ALQHAVKGGP
KNADDAIEQE VFLGTLRTQR RINNTVRDVL RALRIGDSAP VAVAPDLLAV RIYRSRSAQG
LIALEAIPVD VEFRAALQIE QYPFESGVAR AVIDFGDWQR RLQPDELAAA CRRRAGRLID
GELAYFNRQT DAAELVRFYA DLRARLERMD ARAFLLPIGW GAGWRSKTLD DRLRQGTDRD
NAFAQIVQRH TLKKHKSAGF RPGDAFPETR KVIMRGALPW RPLGWVEARF DLNGER
|
|---|
| |