Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1602 |
Symbol | |
ID | 5539078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2063058 |
End bp | 2066066 |
Gene Length | 3009 bp |
Protein Length | 1002 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640893739 |
Product | signal transduction protein |
Protein accession | YP_001431712 |
Protein GI | 156741583 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5635] Predicted NTPase (NACHT family) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCTCAC CAAACGACTT GTTCACCAAC CTGGCCGCCT CGCTGGCCTA TGACCTGTTG AAAGCGGGCG CTGCGCGGCT CACGACCTTT GTTTCGGGTT CGCCGGAGGA GCAGACCCTG CGCCGTTGCT ACCAGAGCGC GTTTGCGGCC ATGCTGAGCG AGGTGACCGC CAGCCTGGAC GACGCCCATC AGGAGCTGGT CGAGTACATT CTGCGCCAAT TTGTGATCCA ACCGCAGGTG GCGGAGGGAT TGCTGGCCCT GGCGCTGAAG GGCGCCGACC TGCCCGACCT GCCCCGCCTG CGTCAGCACT TTGACGCGTT GGGCTTCGAC CGCGCCACCC TGCCCGTGGA TTTTGACGTC GCCCTGGCCG CCTTTACCCG CGGCCTGACG GAGGCACTGC TGGATGAGGC CGTTCGGCCG GGGAGTCCGC TGTACAATCG CGTGAGCCTG GGCCGTGTCC TCGCCCTGCA CGCCCTGTTG CAGCAGCAGG GCAAGACGCT GGAGGAGATT CGCGATGCGA TCCGGCGGCT GGATGCCCAC GGCGGCGCCA CGTACAACGT CATCATTGCC CGGGCCACCG GTGTCGCCAT TGGCGATGGG GCGCGCGTGG AAGCCGCTCT GCCCGCCGAC GTGCGCGACC TTTTGCAGCA GATCCTGCAG GCGCTCAAGC CGCCGCCCGA CTACACCGAC GCCGACCTGC TGAACGCCTA TCTGGATTGG CTGATCCGCC AGCACAGCAC CCTGGAACTG CGCGGCATCC ACCGGGCCGG GCCATCGCTG GCCGTGCCTC TGGAACGGGT CTATGCGGCG CTCCAGGCCG AGACTGTCCC CCCGACCGAG TGGCAGGAAA GTTACCGCCT GCTGGAAGAA GACCTGCAGG CCTGGCTGGA GCAGCAGGGC CTGGACGATT TGGCCGAAGC GGAACGCCGC CGCTACCGCT GGCGCTTCCT GGCCGGGCAC CCCCTCATGC CCGCCCTGGA GGAGCGGGAC CGCCCGCGCC TCTTCTCCGA CCGGAAGGCC GAAACCCTCG ACCTGGCCCA AGCCGTGCGC CGCTTCCGCT GGCTGGTCAT CCTGGGCGAC CCGGGCAGCG GCAAGACCAC CCTGCTGCGC TGGTTGACCC TGCACCTGGC CCGCGCCCTG CGGGAGGGCG CCGACCGCGT CCGCGTCCCC GCGATGCACG TGGACGCCGA AGCAGACGAA GACGCGCCGC CCGTAGACCT GGGCCCGGCC CGCCTGCCCG TGTTGGTGCG CATCGGCGAC TATGCCGAAG CCCGCCGCGC GACCCAAGCC CGCAGCGAGC CGCCCCCCTC CTTGCTGGAA TTCCTGGGGC ATCATGGCTG GCAGAGGGAT TTCCCCACCT TTGGCCGGGA ACACCTCCGC CGGGGAGAGC GCCTGCCCGC GGACGGGTTG CGCCGCCTCA TCCGCGACTT TTTCCGCCGC GGCCAGGCCA TGCTGCTGTT GGACAGCCTG GACGAGATCA CTGCGGCCGA CGACCGCCGC GAGATCATCG GGGCGGTTGA ATCTTTTCTG CAAGAATGGA TCACCGACCC GGGCGGCCGC TCCCCCCTGG ACCCGGGCGC ACTGCCCTGG CGCGACGCAG GAGCCCTCTC TCCGGACGAA AGCGGCGGCA ACCAGATTAT CATCACCAGC CGCATCGCCG GCTACCACGC TGCGCCCCTC AGCCTCCACC TGACCCACGC CACCCTGCAG CCGATGAGCG ACGCGGCCGT GGACCGCTTC TGCCAGACCT GGACGCTGGC CGTCCACCGC CTGCTGGCCG ACCCGGGCGA CAGCGAGGAA GAGGTGGCCC GCCGCGCCGC AGACGAGGCG CAGGCCCTGC AGGCTGCCCT GCACGACCCT ACCCGCCCCG GCCTGCGCGA ACTGGCCGGC AACCCCCTGC TGCTGACCAT CCTGGCCATG GTGCATCACA ACAGCCAGGC CCGCCTGCCG GAACAGCGCG TCCGCCTCTA CCAGATCGCC GTGGAGAACC TGGTGGAGGT CTGGCGGGAT ACCGGCCTCA GCGAGGATGA GGTCGTCCAG GTGCTGGCCC CCCTGGCCGC GCACATCCAC GAGCGCTATC CCAGCGGCCT GATTGAGGAA AACGAGTTGC GCGAGCAGGT GACCCACAGC CTGGCCGAGT ATCGCGGCGA GAACCCCGAC CGCCCCTCGC CGGCCTTTCG GCGGGATGTG GAGGCCTTCC TGCGGGCGGT GCGGGAGCGG GTGGGGCTGC TGTCCGCGCG GGGCGAAGCC GCCTACGGCT TCCTTCACCT GACCTTCCAG GAGTACCTGG CGGCCCGCCA CCTGGCCGGG GACCCCAACG CCGCCCTGGA GGCCATCCTG GCCCGCCGCG ACGACCCGCG CTGGCGCGAG CCGGTCCTCC TGGCCCTGGG CTATCTTTCC TGGAGCCAGA ACATGGCCGC CCGCGGCCGC CTGCTGCGGG CCTTCCTGGA GGCCGACGAC CCCCTGGGTG ACCTGCTGCC CCGCAGCGCC CTGCTGATGG CTGCGGCCAT CCCCGAGATG ACCAGGACGC CCCCTGCCAT CGTGGAGGAG GTAGCCCGCC GCCTGCTTCA GGCCTGCGCC GCCCGGCCAG TCGCCTGGCT GCGCCGGGAG GTGAGCGCCG CTCTTGCCCG CCTCCACCGC AGGGAGGAGG CGTCTCTGCT GGTGGAACGC GCCCTGGTCG AGGCCCTGAC CGCGCCGCCG CCCCCCGACG CGGCCGACCC GGGCCCGGCC GCAGCGGACC TGATCCGTGA ACACAAGTGG TTCACCCCCG ACCTGGCCGA GGCCCTGGTG GAGGCCCTGC CCCGCGATCT GCCGGGAGGA CTGGCCCATC CACCGCGCCC TGCTGGACCT GGCGCAACAG GCTCCCCGGG CCCTGCCCGC CGACCGCCTG CCCTTCCGCC TCGCCCTGCT GGCCGACCCC GCCCTGGCCG CACGGGTGGC CGGAGACCCC GACTGGCTGC GCCTGACCCT GGCCCTCTAC GGCGGACTGG ACGCGAAGGG CTGCTTTGA
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Protein sequence | MISPNDLFTN LAASLAYDLL KAGAARLTTF VSGSPEEQTL RRCYQSAFAA MLSEVTASLD DAHQELVEYI LRQFVIQPQV AEGLLALALK GADLPDLPRL RQHFDALGFD RATLPVDFDV ALAAFTRGLT EALLDEAVRP GSPLYNRVSL GRVLALHALL QQQGKTLEEI RDAIRRLDAH GGATYNVIIA RATGVAIGDG ARVEAALPAD VRDLLQQILQ ALKPPPDYTD ADLLNAYLDW LIRQHSTLEL RGIHRAGPSL AVPLERVYAA LQAETVPPTE WQESYRLLEE DLQAWLEQQG LDDLAEAERR RYRWRFLAGH PLMPALEERD RPRLFSDRKA ETLDLAQAVR RFRWLVILGD PGSGKTTLLR WLTLHLARAL REGADRVRVP AMHVDAEADE DAPPVDLGPA RLPVLVRIGD YAEARRATQA RSEPPPSLLE FLGHHGWQRD FPTFGREHLR RGERLPADGL RRLIRDFFRR GQAMLLLDSL DEITAADDRR EIIGAVESFL QEWITDPGGR SPLDPGALPW RDAGALSPDE SGGNQIIITS RIAGYHAAPL SLHLTHATLQ PMSDAAVDRF CQTWTLAVHR LLADPGDSEE EVARRAADEA QALQAALHDP TRPGLRELAG NPLLLTILAM VHHNSQARLP EQRVRLYQIA VENLVEVWRD TGLSEDEVVQ VLAPLAAHIH ERYPSGLIEE NELREQVTHS LAEYRGENPD RPSPAFRRDV EAFLRAVRER VGLLSARGEA AYGFLHLTFQ EYLAARHLAG DPNAALEAIL ARRDDPRWRE PVLLALGYLS WSQNMAARGR LLRAFLEADD PLGDLLPRSA LLMAAAIPEM TRTPPAIVEE VARRLLQACA ARPVAWLRRE VSAALARLHR REEASLLVER ALVEALTAPP PPDAADPGPA AADLIREHKW FTPDLAEALV EALPRDLPGG LAHPPRPAGP GATGSPGPAR RPPALPPRPA GRPRPGRTGG RRPRLAAPDP GPLRRTGREG LL
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