Gene Rcas_0699 details

Gene Information

• Locus tag: Rcas_0699
• ID: 5538164
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Roseiflexus castenholzii DSM 13941
• Kingdom: Bacteria
• Replicon accession: NC_009767
• Strand: -
• Start bp: 918439
• End bp: 921723
• Gene Length: 3285 bp
• Protein Length: 1094 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 640892855
• Product: transcriptional activator domain-containing protein
• Protein accession: YP_001430839
• Protein GI: 156740710
• COG category: [K] Transcription
• COG ID: [COG2909] ATP-dependent transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 6
• Fosmid unclonability p-value: 0.00060152
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGTAGTTT CTCGAGTTAC GGGCGAGTTC GGCGCTGCTG TGTCTCTTGT ATCGACGGTA 
CTGCTTCCGC GCCTGGAACC GCCGCCCCAG CCAGCGCGCA TCATCGAGCG CCCGCGTATT 
GACGGGCTAC TCGCTGCGAT CGCCGATTAT CCGGTGACGC TTGTTCTTGC GCCGGCCGGC 
AGCGGCAAAA CGGTCGCGCT TACCAGTTTT GCGCGCCACG GTGGATGGCC TGCCGCCTGG 
TGCCGCCTGG ACCCCGCAGA TACGCCATTG TCGCTGGCGT TGCACCTGGC GACCGCCTTT 
CGCCCGATCA CGGGCTTCGA TCATGCTCGC TTCGCTGCTG CGCATCCGGT GGATGTGCTC 
GATGGACTGA TCAATGCGCT GACAGCGCTA GGCGATGAGA CCTTACTGAT CCTGGACGAT 
CTCCACCATG CAGATCGACG CCCGGAATTG CGCGTTCTGA TCGAACATCT GATTGACCGT 
CTGCCGCCGC ATCTGCATCT GGTGCTGGTG AGCCGGGAAA TGCCTGCGCT CGCCTCCCTG 
CCGACGATTG CGGCGCGTGG CGAACTCTAT CGCCTGAGTC GCGCGCAACT GGCGTTCACC 
AATGCTGAAG CGCGTGATTT CTTTGCCGCA TACGGCTTGC CGCCGCATCC AATCGATGCC 
GAGCTGAACA CCATAGCGCG CGGGTGGCCC CTGGCACTCC GCTTCTTTGC CGCAGCGCGC 
ATCGACTCCG CAACACCCTC CGATCAACCG CCGACTCTCG AGCGCTTGCA GGAGAGTATC 
GCGCCGCACC TCGATGCATA TCTGGCGCGT GAGGTGCTGG GCGATCTGCC ATTCGCTGTG 
CGCACCTGGG TGCTTGGCAC GGCGTTGATG CGCTGGATCG ATGAAGCGGC ATGCGCTGCC 
GTCACCGAAC TGGCACATCT CCATATGACC GTCGATCTAT TGGAACGTTG GGAGTTGTTC 
ATTGAAACCC TCCCTGACGG GAGGCGTGTC TATCAACCTT TGCAGGCAGC CAGTTTCGCA 
CGCCTGGCGG AGCGCGATTT GCCCGATTGG CGTGCCTTCC ATGCGCAATT AGGGCACTAT 
TATGCTGCGC ACAACGACGA CCACAGCGCC GCGCACCATT TTCTCGCCGC CGAACGATGG 
GAAGACGCCG CTGCTGCGTT GAGCCGGATG GCGCTCTCCG GCGTGTCTGG CTCACAGGCC 
GCGGCGCTCC TGGACTGGAT CGACCAGATC CCGCCAGCGC ATCGCAACAG CGCCGCGCTC 
CTCGAGGCGC GCGCTGTCGC CGAACGCCGT CTCGGTCGCT ATACGCACGC GGTTGAACTG 
TACCGCAAAG CGGAAGAACA GTACCACGCA CAGGGCGACA TAGAGGGACA GGTGCGCGCG 
CTCCGCGGGC AGGCGGAGGT GTATATCGAT ACGGTGCAAC CTGCGCCGGC TGCGATCCTG 
TTGAAACGCG CCATGAAACT CTTGCCGCGC GATCGCCGCG CCGAACGCGC AACCATCCTC 
AGTCTCCAGG CAGAAAACTG GATCAATCGC GGTCGCGCCG ATGTGTCGGT CCTGATCATT 
GCAGCGGCGC ATCGCGAGGC ATACGGCAAA ACAGCGCACA CCGACGCAGT TGGAGGGTAT 
CGCCGGTCCG CCATCCTGTC GCCCCGCCTG TTGCTGCGCA GCGGCAGGCT GATCGATGCT 
CGTCGTCTTC TCGAAGAAGA ACTCGGTCTG GAAGCCGGCA GAGCGCGTGC GGAACATTCA 
TTGCACCGTG ATCCGCTCCT GCTGCTGGCA TTGATCGAGT GTATGCTGGG CAACGGCGTG 
CGCGCACTGG CGCTCGCACA ACGCGGGTTG CTCGAAGCGC AACGCGGCGA CTCGCCGCTG 
ACCGAAGCAA TTGCCCATAT GCGCCTCGGA CATGCCTGTC TTGTGACGGC ATCAAGCGAT 
GAGATGGCGC GATCCCACTA CCGCGCTGCG CTCGACATCA TCGAGGCAGT CGGCATTCCG 
CGCGCACGCG CTGAGGTGAT GCTGGGGCTG ACCCTGCTCG AAGGGCATGC CGGCAATCTC 
ACGGCTGCCG AAGCCTATGC CCGCGATGGT CTCGACCGCG CCCTGGAGGC GGGTGATGAG 
TGGACGGCAG CGCTCATCTG GTTGGCGCTC GGCAGCGTCG CTGCGGCTGC CGGCGATCCG 
CGTGCGCTGG AGTGGATTGG CGAGGCGCAT CAGCGGTTTG TGCGCGGCGA TGATCAGTAC 
GGACAAACCG TCGCGCTCCT CTGGGAAGCG CACGTTCATG TGCAGTCCGG CAATGAAATC 
GAAGCCGATA AGAAACTGGC GCGCCTCCTC GAACTGGTAA GCGCCCATGG ATTCGATGGC 
GTGTTGACCA CACGCACGCT GTTCGGTCCC CACGATCTGG CGATCCTGGT TCCGCTGCTC 
CTGCGGGGAC GGGTATTGCG CGGCGCAGCG CAGCGTCAGG CAGCGACCGC GTACCGGCTC 
TTGCGGCAGG GCTTCCCGTC GATCGCGGCT GATGATGCCG TCGATATCTA CCATCCCGGC 
TATACACTGC GGGTCTATAT GCTGGGGCGT TTCCGCATCT TCCGCGGCGC GCACGAGATT 
CAGGCGCGCG AGTGGCAACG AGAGAAAGCG CGGCAGTTGT TGCAACTGTT GCTGACCTAT 
CGTGGCATGT GGTTGCAACG TGAGCAGATC TGCGCCTGGC TCTGGCCCGA CAGCGAACCG 
GCAGCCGCCG AGCGGCAGTT CAAAGTGACA CTCAACGCGC TCAATAATGT GCTGGAACCG 
CGCCGACCGC CGCGTGTCGC GCCGTTCTTT ATTCGGCGGC AGGGGCTGGC GTATAGTTTT 
GCCCCATCTT ATGGATGCTG GATCGATGTG GACGAGTTCG AACTGCGCAC CGCCGGTGCG 
CCGGGACGCG ATCCAGAGGT CGAGATCCGC AGCCGCCGCA CAGCATTCCA TCTGTATCGC 
GGCGACTATC TCGCCGAGGC GCTGTACGAC CCCTGGACGC TCGAAGAACG TGAGCGCTTG 
CTGGCGCGGC ATCTGGCATC GACCGCGACC CTTGCCAGTT TGCTGGTTGA CCGCGGCGAT 
TTCGATGAAG CCATCGATCT GTGCGAACAC ATCATCCGCC GCGACCGTGG TTATGAGGAG 
GCGTACCAAA CCCTCATGCG CGCCTATGCC CGCGCAGGGA GCCGTTCCCA GGCGTTGCGC 
GCCTACGCGC GTTGCGTTCA GGCATTGCAG GACGAACTGG GAATAGAACC GCTCCCGGAG 
ACAACCGACC TCTGTGAGCG GATCAAGCGG AACGAGGCGG TGTAG 

 

Protein sequence

MVVSRVTGEF GAAVSLVSTV LLPRLEPPPQ PARIIERPRI DGLLAAIADY PVTLVLAPAG 
SGKTVALTSF ARHGGWPAAW CRLDPADTPL SLALHLATAF RPITGFDHAR FAAAHPVDVL 
DGLINALTAL GDETLLILDD LHHADRRPEL RVLIEHLIDR LPPHLHLVLV SREMPALASL 
PTIAARGELY RLSRAQLAFT NAEARDFFAA YGLPPHPIDA ELNTIARGWP LALRFFAAAR 
IDSATPSDQP PTLERLQESI APHLDAYLAR EVLGDLPFAV RTWVLGTALM RWIDEAACAA 
VTELAHLHMT VDLLERWELF IETLPDGRRV YQPLQAASFA RLAERDLPDW RAFHAQLGHY 
YAAHNDDHSA AHHFLAAERW EDAAAALSRM ALSGVSGSQA AALLDWIDQI PPAHRNSAAL 
LEARAVAERR LGRYTHAVEL YRKAEEQYHA QGDIEGQVRA LRGQAEVYID TVQPAPAAIL 
LKRAMKLLPR DRRAERATIL SLQAENWINR GRADVSVLII AAAHREAYGK TAHTDAVGGY 
RRSAILSPRL LLRSGRLIDA RRLLEEELGL EAGRARAEHS LHRDPLLLLA LIECMLGNGV 
RALALAQRGL LEAQRGDSPL TEAIAHMRLG HACLVTASSD EMARSHYRAA LDIIEAVGIP 
RARAEVMLGL TLLEGHAGNL TAAEAYARDG LDRALEAGDE WTAALIWLAL GSVAAAAGDP 
RALEWIGEAH QRFVRGDDQY GQTVALLWEA HVHVQSGNEI EADKKLARLL ELVSAHGFDG 
VLTTRTLFGP HDLAILVPLL LRGRVLRGAA QRQAATAYRL LRQGFPSIAA DDAVDIYHPG 
YTLRVYMLGR FRIFRGAHEI QAREWQREKA RQLLQLLLTY RGMWLQREQI CAWLWPDSEP 
AAAERQFKVT LNALNNVLEP RRPPRVAPFF IRRQGLAYSF APSYGCWIDV DEFELRTAGA 
PGRDPEVEIR SRRTAFHLYR GDYLAEALYD PWTLEERERL LARHLASTAT LASLLVDRGD 
FDEAIDLCEH IIRRDRGYEE AYQTLMRAYA RAGSRSQALR AYARCVQALQ DELGIEPLPE 
TTDLCERIKR NEAV