| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0393 |
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| Symbol | |
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| ID | 5537855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 495459 |
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| End bp | 497666 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640892556 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001430543 |
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| Protein GI | 156740414 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0232636 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGTAT ATACCGTGCG CTCCACTCGT CACACGTTGA CTGTGACGCT TGCCGAACTC
GAGTTGGAGT TTTCCCTCGA TGATGGCGGG TTGCGCGCGC TCCGGCGACC GGATGGGCAA
GACGTGATTG GGCGTGGTAC GCCTCACGCC GGCATCGATG TCTCACTCGC CGACACCGGT
TGGTTGACCG AACGCTCGTT TGCGCGTTAT CTCAACCATA CACTCTTCAA CATTCCCGGT
GGCGTTGAGA TCGTGCTCGT CATTGGTCTT GGACCACTGA AAATCTATGA TCGCTACCGG
GTGATCGGGT CGCTCATCGC GCGCCGTATC AGCCTTGAGA ACACAGGTGA AGACGAACTG
GCGCTGTGTG GTGTGCGCCT GGCAATCAGC GGCGCATGCG TCGGTGCGCC GGAGCGCTGT
CGCTTTGAAG CTCCTGCAAA TGTGGTGCGT CCTCGTATGC CGATTGCGAC ACTGCGCAGC
GATGTTCGCC AGGGCCACTG GTCGGACGCG ACGACCCTCG AAACTCCGGC ATTCGCCCTT
GCGCCGGCCG ACGCGCATGG GGTGCTGGCG CTCCATAACG ATATGCTTGG CGAAACCCTG
GCTTGCTGGT ATGCCGACAC GTCCCATCCG GCGCGTCCGC GAGTGGAAGG CGATGGCAAC
TCGGTTACCT TGCTCCACGA GATCCGGCTT GCCGAGCGGT TGCCGATTGA AGTGGCGCTG
TCGGTTGGCG TACAGATGCT GCTGTTGGAA CGCGCACCCT GGCACGAGGC ATTGCCGCGT
ATTCGCCGGA TGATGCCGCA GCGTCGAATT GATGTTTCGC CGCCATCCTG GCTGGCGGAC
ACCGCGATAT TCGTGACGCA CCCGATGCAC TATGGCGATG TTGCCGGCTT GATCGATGCG
CTCGATGCCA TCCGGCGTCT CGGTTGCGCC ACGATTTGCC TTCTGCCGGT GCACGACATT
GCTGCACCGC ACCGGCATGC GCTGGAATGG TCCCCCATGC GACCGGAGGA TCTCTATGCG
TTGCGTTCCT TCGCTACTCT GGATGCGTCG ATCGGCGGCA TCGAGGGGTT GCGCCGTGTT
GTCGCCGCTG CTCATGCGCG CAGCATGCAG GTGATGATCG ATCTTCCGCT CTCCGGGTGC
GCTGCCGACT CGCCGTATGT CTATCATCAT CCCGAATGGT TTTGCCTTGA CCAGACGGGT
CAGTTCATCC GCTTCTCCGG TGAGGTCGAT ACCCTGTACT TCGACTGGCG CAATGCCGAT
GTGCGTTCGC TCGCCATCAG CGAAGCGCTG GCGCTGATGG AACAGACTGG CATCGACGGC
TTCCGGGTGC TGGTCGCGCG CGACGTGCCG CCGGGGTGGC CCCTCGGTTC GGCGTTCAGC
GGCAGCAGCA GTATGGGGGT GACGCGCCTG ATTGAGGAAT TGTATGCGGC CATCCGTCAA
CACTATCCTG ACGCAGCGCT GATGACCGAT CTGGCAGGAC CGTTGCTGGC ATCCAGCCGC
GATCTGCTGA TCGATCAGGC TGCACACCAT ATGTTCACTC AATTGGCAAT CGGGCGCCTG
AGTGTGCCCG AAATGCAGCA CTGGCTCGCT GATGTGCTGG CAATTGGCGA TCCCGGAACG
CTGCGCGCCT GCTTCACCGA GAGTCATCAT TCGTGTGTGA GCAATCCGCT GGCGGAGGTG
TTGCGCGGTT CACGCGCTGC CCGCATGATC CTCGCAGGAA TGGTAGGGTG CGGGTATGTG
CCCATGATCC GCGCCGGTCA GGAACATGAT CAGGCAGACC GGGAATTCAT TGCGCAGTTG
CTCAACGCGC GCACGCGCAG TATTGCGTTG CGGCGCGGAA CGGTTGAACC CGACGGCGCG
CGCTGCAATG ATCCGGCGAT CTTCGTGATG CTGCGCCGGC ACGAGGAGGA GTGCGTCGTC
ACACTGCTGA ATGCCAGCCC GATGCGTCGT TGGGTGACGC TGGAACTGCC GCGCTCCGAT
GTGCCAGAAG GCGACTATCT GGTGAGTGAC CTGCTCAATG AGCCATTGAT CGACGGAGCG
CCCGATGTTC TGCTGCAACA CGGCGATCTG ACGGCGTTCC CTGTGGCGCT GGGTCCGTTC
GCGGCGCGCT TCCTGGCGCT GCGTTCCGCA CCGGCTCCGG TTTTGCACAC GTCTGGTGGT
CACATCCAGG AGTCAGGCAA CCCATCACCC CACCCGCCTG ATGGTTGA
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| Protein sequence | MAVYTVRSTR HTLTVTLAEL ELEFSLDDGG LRALRRPDGQ DVIGRGTPHA GIDVSLADTG
WLTERSFARY LNHTLFNIPG GVEIVLVIGL GPLKIYDRYR VIGSLIARRI SLENTGEDEL
ALCGVRLAIS GACVGAPERC RFEAPANVVR PRMPIATLRS DVRQGHWSDA TTLETPAFAL
APADAHGVLA LHNDMLGETL ACWYADTSHP ARPRVEGDGN SVTLLHEIRL AERLPIEVAL
SVGVQMLLLE RAPWHEALPR IRRMMPQRRI DVSPPSWLAD TAIFVTHPMH YGDVAGLIDA
LDAIRRLGCA TICLLPVHDI AAPHRHALEW SPMRPEDLYA LRSFATLDAS IGGIEGLRRV
VAAAHARSMQ VMIDLPLSGC AADSPYVYHH PEWFCLDQTG QFIRFSGEVD TLYFDWRNAD
VRSLAISEAL ALMEQTGIDG FRVLVARDVP PGWPLGSAFS GSSSMGVTRL IEELYAAIRQ
HYPDAALMTD LAGPLLASSR DLLIDQAAHH MFTQLAIGRL SVPEMQHWLA DVLAIGDPGT
LRACFTESHH SCVSNPLAEV LRGSRAARMI LAGMVGCGYV PMIRAGQEHD QADREFIAQL
LNARTRSIAL RRGTVEPDGA RCNDPAIFVM LRRHEEECVV TLLNASPMRR WVTLELPRSD
VPEGDYLVSD LLNEPLIDGA PDVLLQHGDL TAFPVALGPF AARFLALRSA PAPVLHTSGG
HIQESGNPSP HPPDG
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