Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0958 |
Symbol | |
ID | 1219766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1004804 |
End bp | 1007527 |
Gene Length | 2724 bp |
Protein Length | 907 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637237320 |
Product | putative VGR-related protein |
Protein accession | NP_519079 |
Protein GI | 17545677 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria [COG4253] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.677133 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCCGC GCCCGCTTTG GCCGTGGCTG TTTTCGCTTG TCGCCAACAT TCCGAGAAGT GAGAGCATGG CCGAATCCGA TCGAACGGCA CATCTGCACG GCATCCTCTT TTTCCAACAG AGCAACCGCC TGTTGGGCCT GTCGTTCCCG AAGGACGACA CTCCCACGGC CACTGACCCA CGGGGTCGCT CGTTCCCCGT GCAGATGGTG GTCGAACGCC TGGAAGCCCA GGAGGGCCTG GGCGAAGACT TCCGTTTCGA GTTGACGCTA TTGGCCGATC ACGCCGGCCT TGTGCTGGCG GACATGCTGG GCAAGCTGCT GGCGGTGTCC CTGGTCAAGC CGGACGGCAC CCTGCGCTGG TTCACCGGGC ACGTGTCGGA ATTTTCATTG GTGGGCAGCG ACCCCGGTGT GGCGACCTAC CGGGCGGTGC TCAGGCCGTG GCTGTGGTTT GCGCTACACC GGATCAACAA CCGCGTGTTT CGAGACCGGA GCCTGTACGA GCAAATCGCG GAAATCCTGC AAGACTATGG CGCCTGGGCG CAATGGCGCT GGGACGCGAG CGGAGCTGAT GCGCCGTTCA CCATGGCCGT GCAGGGCGGC GGCCAGGGCG AGAGCGACCA CAACTACATC CACCGCAGGC TGGAAGCGCA GGGCTGGACC TACCGCTACG AACACGACGC GACCGGCCAC CGGCTGGTCA TCTTCGACAG CAACAGCCAG TGTCCGCGCG TGGCGGGCGA CCATCGGATA CCCTTTCAGG CTGCGGGCGG CCCCCAGGAG GAAAACGCCA TTCAGCGCTG GACGCCGGTG CAGACCGCTG CGGCCGCGCT ATTCGCGGCG AGCGCGTTCG ACTTCAAGCA GTCGCAGGCA CGGCACCAAG CAGAATCGAC GCTGCGCAAG CAGGGCCGTG TTCCGGAGCT GGAGGCGCAC GAATACGTGG GGCACTACGG CTTCACGAAG GAAGACCCCA CGGGCGCTGC GCTGCTGAAC TTGCGCAGAG AGGAAGTCGA AGCGCACGCC GAACAATATC AAGCGGAAGG CAACAACAGC AGCGTGGCGG CCGGCTGCTG GTTCGAATTG TCGGAGCACT TCAGCAACAC CGAGCGCGAG GAGGACAGCC AATACCTGAT CGTGGCGGCC AGCCACAGCG CGAGCAACAA CTACCTTGCG GAACTCGGGC GACAGGGGGG CCGTGAGGCG CAGCCGCTTG CCGGCCGCAA GGGCGAATAC CGTAACCGCT TCACCGCGAT CAAGCGCGCG GTGCCGTGGC GTCCGGGGCG GGGCAGGAAC AGCGTCGATG TGAGGGTGTA CGGGCAGCAA ACCGCGACAG TGCTTGCCGC TGGCGGGCTG GGTGCGCTGG ACGTTGATGA GCACGGCCGC ATCCTGATTC GGTTCCATTG GGACCGGGAA GGAAAGTTCA GTGCGCGTGT GCGGGTAGCG AGCAATTGGG CGGGCGGCGA AACCGGCATG GTGTCGTGGC CGCGCGCGGG TAGCGAGGTG CTGGTCGTTG CCCTGGACGG CAACCCCGAC CACTTCCTCG TCATCGGCGT TGTCCACAAC GCTCGCCGCA TGCCGCCGTG GCAATTGCCC GCGCAGGGAG CGCTGATGGG TATCCGCAGC CGGGAACTGA CCCCGGACGG CGGCAACGAT CCCGGAGGCC GCAGCAATCA GCTCGTTCTG GACGACACGG CGGGCAAGAT TCAAGCGCAA CTCAAGAGCG ATCACCTGCA TAGCGCGCTG AGCCTGGGGC ACATCACGCG GATCGATGGC ACGACCGGCC GGCAGAACCC ACGCGGCCAG GGCTTCGCGC TGGACACCGA TGGGCACGGT GCGAGCCGTG CCGCTGGCGG GATGCAAGTC ACTACGGAAG CCCTGTCCGG TGGACAGGGC AACATGATGG ACGTGGGTGC GCCGGTAGCG CGGTTGACGG TGGCGCACAA CATGCACGAG CGCTTGTCGG AAGCGGCGTG TACCGCGGGG GCACAACAGG CCGACGACCA AGGCGAGGTT GCCAAGCAAT TGCACCAGCA GAATACCGAC CTAAAGGGCA ACGGCGGCGA TCCGGCGCAA GGGCGGTTTC CCGAGTTCCA GCAACCGCAC TTGATGCTGG CCAGCCCGGC CGGAATCGAG AGCAGCACGG CGGGCAGTAC GCACCAGCAG AGCAACGCGC ATCACGCGAT CACCAGCGGC GGGCACGCCA GCATTGCCAG CGGGCGCAGC TTCCTCGCCA GTGCGAAGGA TGCGATCCGG CTGTTTGCCT ACCGGCTCGG CTTGAAGCTG GTGGCCGCGA GCGGCGACAT CGACATGCAA GCGCTCAAGA ACGGCATCAA CATCCTGGCG AAGCTGGAGA TCAAGATGGA GGGCAAGCGG GTGGACATCA CCGGACTGGA CGGGGTACGT ATCAACGGGG GCGGAAGCTA TATCGACGTC AGCCAGGCGG GGATTACGAG CGGCACCAAC GGCCAGTTCC AGGTGCATTC GGCTGACTAT TCGTTCTCGG GGCCGGATAG CCGGCCAGTG GTGTCGCATG CGGTGACGTC GGCGTTGAAG CCTGATGAGC CCTTGCGCGT GGTTGATGCG TTGGGCAACA GAGTTCCGGA TAGCCATGTC ATCGTGCGGC CCGGTCAGGA CGAAACGCGC ACGGTTATTG AGGGCGGGAA GGTTGCTCCC GACGCATCGC TCGACCACCA CATCATTCGG CGCTGGCGCC CTCGGCGAGG TTAA
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Protein sequence | MQPRPLWPWL FSLVANIPRS ESMAESDRTA HLHGILFFQQ SNRLLGLSFP KDDTPTATDP RGRSFPVQMV VERLEAQEGL GEDFRFELTL LADHAGLVLA DMLGKLLAVS LVKPDGTLRW FTGHVSEFSL VGSDPGVATY RAVLRPWLWF ALHRINNRVF RDRSLYEQIA EILQDYGAWA QWRWDASGAD APFTMAVQGG GQGESDHNYI HRRLEAQGWT YRYEHDATGH RLVIFDSNSQ CPRVAGDHRI PFQAAGGPQE ENAIQRWTPV QTAAAALFAA SAFDFKQSQA RHQAESTLRK QGRVPELEAH EYVGHYGFTK EDPTGAALLN LRREEVEAHA EQYQAEGNNS SVAAGCWFEL SEHFSNTERE EDSQYLIVAA SHSASNNYLA ELGRQGGREA QPLAGRKGEY RNRFTAIKRA VPWRPGRGRN SVDVRVYGQQ TATVLAAGGL GALDVDEHGR ILIRFHWDRE GKFSARVRVA SNWAGGETGM VSWPRAGSEV LVVALDGNPD HFLVIGVVHN ARRMPPWQLP AQGALMGIRS RELTPDGGND PGGRSNQLVL DDTAGKIQAQ LKSDHLHSAL SLGHITRIDG TTGRQNPRGQ GFALDTDGHG ASRAAGGMQV TTEALSGGQG NMMDVGAPVA RLTVAHNMHE RLSEAACTAG AQQADDQGEV AKQLHQQNTD LKGNGGDPAQ GRFPEFQQPH LMLASPAGIE SSTAGSTHQQ SNAHHAITSG GHASIASGRS FLASAKDAIR LFAYRLGLKL VAASGDIDMQ ALKNGINILA KLEIKMEGKR VDITGLDGVR INGGGSYIDV SQAGITSGTN GQFQVHSADY SFSGPDSRPV VSHAVTSALK PDEPLRVVDA LGNRVPDSHV IVRPGQDETR TVIEGGKVAP DASLDHHIIR RWRPRRG
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