| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05406 |
|---|
| Symbol | RSp0927 |
|---|
| ID | 1223234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1167050 |
|---|
| End bp | 1168591 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637240787 |
|---|
| Product | putative cation efflux system transmembrane protein |
|---|
| Protein accession | NP_522488 |
|---|
| Protein GI | 17549148 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAA CCCTCATCGC CACAGTGGCG GGCGCGTTGC TGATCAGCGC GGCGGCCTAC
GGCGGCTACC GCATCGGCCT GTCGCGGGGC ACGCAGTCCA CCCTGGCCAA CGCTTCCATG
TCGAGCCCCG CCGGTCCGAA CGGCCTCAAG GCCGGCGACG TCGACCTGCA AACCGGCAAG
CGGGTGCTGT ACTGGCACGA CCCGATGGTG CCGGGCCAGC GCTTCGACAA GCCGGGCAAG
TCGCCCTTCA TGGACATGCA GCTCGTGCCC GTCTACGCGG ATGGCGATGC CGGCGGCAGC
GGCGTTGCCA TCGACAGCCG CGTCGCGCAG AACCTCGGCG TCCGCACCGC CGAGGCCCGG
TTGGGCAACC TCGGAGCCGT GCTGGAGGCG CCGGGCAGCG TGGCCGTGGA TGAACGTAGC
GTGCAGGTCA TCCAGGCACG CACCAGCGCG TTCGTGCAGC AGGTGGCGGT GCGCGCGACG
CTGGACCCGG TGCGGCGCGG GCAAACGCTG GTGTCGCTGT ACTCGCCTGA CTGGGTGGCG
GCGCAGGAGG AGTATTTAGC GGTGTCGCGC CAAGCCGCGC ATGGTCAGTC CGATCTGGTG
GGGGCCGCCA AGGCGCGCAT GCTGCAGGCC GGCATGACGC CGGGACAGAT CAGCGCCGTC
ACCGCGTCGG GCAAGCTGCA GCCGGGCCTG GCGATCACCA GCCCGATCGA TGGTTTCGTC
ATGGAAGTCG CCGTGCGCGA CGGCATGACG GTCACGCCCG GCATGACGCT GTTCCGGCTG
GCCAATCTGA GCCGCGTCTG GATCATTGCT GAAGTGCCGG AAGCGCAGAG ACGTACAGTG
GCGCCCGGCG CGCCGGTCAA GGTATCCGTC GCTGGCTTGG CAGAACCGGA AACGGCCACG
GTGGACGCCA TCCTGCCGGA CGTGAATGCC GCCACGCGCA CGATCAAGGT GCGCATCGTG
TTGCCGAACC AGGACAAGCG CCTCGTGCCG GGCATGTTCG CCACCGTGCG GTTTGACGGC
GGCCAGGACA AGGAAGCGTT GCTGATCCCG TCCGAGGCAG TGATCCGCAC CGGCCAGCAC
AGCATCGTGA TGGTGGATGG CGGCCAGGCC GGCTTCGTGC CCACCGAGAT CCAGACCGGG
CGCGAAGCCG ATGGCCGGGT CGAAGTACTG CAGGGCTTGC AGGCCGGGCA GAAGGTCGTC
ACCTCCGGCC AGTTCCTGAT CGATTCCGAG GCCAGCCTGC GCGGCACCAC CGAACGAATG
ACGGCGCCGT CGGCCGCTTC CTCGCCCGCC GCGGCCACCA CCGAGCACGA AGGCACGGGC
CGCATCGAGG CGGTGAGCGG CGAAGGGCTG ACCATCTCGC ATGGACCGAT TCCTTCGCTG
CAGTGGGGCG CCATGACGAT GGACTTTGCC GCGCCGCCGG CCGGCCTGCC GAAGGGTCTG
AAGCCGGGCG AGCGCGTGCG CTTGCGCTTC CATCTGGACA AGGACGGCAT GGCAGTCCTG
TCGTCGGTGG AGCCGGCCGG TGACACAGGA GGCAAGCCAT GA
|
|---|
| Protein sequence | MTKTLIATVA GALLISAAAY GGYRIGLSRG TQSTLANASM SSPAGPNGLK AGDVDLQTGK
RVLYWHDPMV PGQRFDKPGK SPFMDMQLVP VYADGDAGGS GVAIDSRVAQ NLGVRTAEAR
LGNLGAVLEA PGSVAVDERS VQVIQARTSA FVQQVAVRAT LDPVRRGQTL VSLYSPDWVA
AQEEYLAVSR QAAHGQSDLV GAAKARMLQA GMTPGQISAV TASGKLQPGL AITSPIDGFV
MEVAVRDGMT VTPGMTLFRL ANLSRVWIIA EVPEAQRRTV APGAPVKVSV AGLAEPETAT
VDAILPDVNA ATRTIKVRIV LPNQDKRLVP GMFATVRFDG GQDKEALLIP SEAVIRTGQH
SIVMVDGGQA GFVPTEIQTG READGRVEVL QGLQAGQKVV TSGQFLIDSE ASLRGTTERM
TAPSAASSPA AATTEHEGTG RIEAVSGEGL TISHGPIPSL QWGAMTMDFA APPAGLPKGL
KPGERVRLRF HLDKDGMAVL SSVEPAGDTG GKP
|
|---|
| |