| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05354 |
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| Symbol | RSp0842 |
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| ID | 1223149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1063471 |
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| End bp | 1065417 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637240702 |
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| Product | leucine-rich-repeat protein |
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| Protein accession | NP_522403 |
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| Protein GI | 17549063 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.153202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.61314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCGC TCACCGGTAT TGCCACCTCG CCTTCTGATC CGACCGCGCA AGAGCCGGCC
CAGGCAGAAC CGGCGGCTGC GCCGTCTTCG CTGGTCGCCC GCCTGTCACG CGCATTGAGG
CGCGCGCTGC AGCGCGTGCG TCCCACGGCG GCAGGGCACG CGAACCCGGC ACCCGTGGCG
GCGCGGGCAC ACACGACGAT CATGCCGCGG CACGAGCGCC GGCCGGCGGC CGAGCCGTCG
CGCGCCCAGC ACCAGATGCG TGCCGATGCC GCACGCGCCG CGCAGCGCCT GCAGCAGCCG
GCGGGCGGGC TCCACGCGCA TCATGCGCGG GGCACCGTAC CGTTCGCCGA CGGCAACCGC
TGGATGGCGG TCTGCGATGC CGTGGCCGGC TGGCAGCAGG AAATGGTGCG CCGGGTCAGC
CGCTACAGCG GTCCGCTGCT GCCCGATGCC AATCGTCCGA CAGAGCAGGG GCTCGCGCTG
GCGGCCACGC GCATGCTGCT CGCCATGCAG CAGAAGAGCC GGCACCTGGT GCTGGACAGC
ATTCCCGTGA TGCGCCTGCC GAGCGCGCTG TGCAATGCCG AGCAGGTCGA AGTGCTGACC
GTGCACGACT GCGATGTCTT CGAGTGGCCG GCCTCGGGCG GATTGCCGCC CAACCTGTGC
TCGCTGCATT TCTCGCGCAA CCGGCGCCTG ACCGCGATTC CGGGCAGGAT GGGCCAGCTC
CAGCAACTGC GCGAGCTCGT CATCCTCGAT TCGCCGCTGC GCGCGTTGCC CACCGCGGTG
TCGCAGCTGC CGCAGCTGGA GCGCCTCGTG CTGCAGGGCT CGGACCTGCG CATCGTGCCG
GTGGAACTGG GCGCCCTGCA GCGGCTGCAG ACCCTCACGC TGGCCAGCAG CCGGCTGCTG
ACGCAGTTGC CGACCAGCCT GGGCCAGCTG CAGCGGCTGC GCCAACTGAA CCTGCGCGGC
AATCCGGTGC TGCCCGCGCT GCCGGAGACC GTGGGCCAGC TGTCGGTGCT GGAGTCGCTG
GACCTGCGCG AGAACACCGG CATGACCACG CTGCCGCGCT CGCTCGGTTC GCTGCGCCGG
CTGCGCCACC TGGACTGTTC GGGCATGACG GCGCTGACCG CGCTGCCCGC CGACCTCGGC
GCCTGCACGT CGCTGCGCAC GCTGCGCCTG CGCGATTGCG TCGCGCTGCG CACGCTGCCG
GCCACGCTGG GCGGCCTGAA GCGGCTCACC CATCTCGATC TGCGCGGCTG CGTCGGCCTG
ACCGATCTGC CCGAGGCCCT GCGCAGCCTG CCCGCGACCT GCCGCATCGA TGTGCCGCCG
CATCTGGCGG AGCGCCTGGT CCAACGCCGG CGCACCGTCG CGCAGGCACC GTCCGTGCCG
CTGCCGAACC CGGGCGAGGG CGCGGACTGG GGACGCCTGC TCCAGAACTG GCGCACGCGG
CTGGGTCTCT ACGACACCGA ATACGGCAGC GATGCCTTCC GCATCTGGGT GGAGCGCTCG
GCCAATGCCG CCATGCCGGA CGAGGTCCGT TCGCGCCGCG ACGCCCGCCG GCTCGGCTTC
CTGGTCGATG GGCTGTGCAA TTCCGCCACG CTGCGCTGCC TGGTCTTCCA GCGCGCCCAC
GAGCGTTACG CCCTGGGGCA CCTGGACGAC GAGGGGCTGG CGATCCCGGA GCTGATGGCC
TTGCTGACGG AGGAGTGCGT GCGCAACGGC CCGTCGTTCG CCGATCGGGC GGCCACGCTG
ATGCGTCACG AAGCCTGGTC CTCGCTGCTG GAGGGCGCCA CGGGCAACGA CTTCATCGGC
GAGGCGGTGG AGGTGCTGGC GGACACCCTG CCGCAGATCT ACGCCGATCG CCACGGCATG
CCCATCGACG GCGATACCGT GCTCCCCGTC CAGCGGCAGG CCGCGGCGGC GCAGGTATGG
CTGCCGGCCA CGCCGACGAT CCACTGA
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| Protein sequence | MQSLTGIATS PSDPTAQEPA QAEPAAAPSS LVARLSRALR RALQRVRPTA AGHANPAPVA
ARAHTTIMPR HERRPAAEPS RAQHQMRADA ARAAQRLQQP AGGLHAHHAR GTVPFADGNR
WMAVCDAVAG WQQEMVRRVS RYSGPLLPDA NRPTEQGLAL AATRMLLAMQ QKSRHLVLDS
IPVMRLPSAL CNAEQVEVLT VHDCDVFEWP ASGGLPPNLC SLHFSRNRRL TAIPGRMGQL
QQLRELVILD SPLRALPTAV SQLPQLERLV LQGSDLRIVP VELGALQRLQ TLTLASSRLL
TQLPTSLGQL QRLRQLNLRG NPVLPALPET VGQLSVLESL DLRENTGMTT LPRSLGSLRR
LRHLDCSGMT ALTALPADLG ACTSLRTLRL RDCVALRTLP ATLGGLKRLT HLDLRGCVGL
TDLPEALRSL PATCRIDVPP HLAERLVQRR RTVAQAPSVP LPNPGEGADW GRLLQNWRTR
LGLYDTEYGS DAFRIWVERS ANAAMPDEVR SRRDARRLGF LVDGLCNSAT LRCLVFQRAH
ERYALGHLDD EGLAIPELMA LLTEECVRNG PSFADRAATL MRHEAWSSLL EGATGNDFIG
EAVEVLADTL PQIYADRHGM PIDGDTVLPV QRQAAAAQVW LPATPTIH
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