Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS03927 |
Symbol | RSp0552 |
ID | 1222859 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 694946 |
End bp | 696079 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637240412 |
Product | hypothetical protein |
Protein accession | NP_522113 |
Protein GI | 17548773 |
COG category | [R] General function prediction only |
COG ID | [COG2215] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.176978 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAGT TCTCGACCCT TCTGCAGCAA GGCAACGCCT GGCTGTTCAT TCCCAGCGCC ATCCTGCTCG GCGCGCTGCA CGGCCTGGAG CCGGGCCACT CGAAGACCAT GATGGCGGCG TTCATTGTCG CCATTCGCGG CACGCTGACG CAGGCCGTCC TGCTCGGCCT GTCGGCCACG ATCTCGCACA CGGCGGTCGT TTGGGCCGTG GCGATGGCGG GCCTGTATTT CGGCCGGAAC TGGAACGCGG AAGCGACGGA GCCCTATTTC CAGGTCGCGT CCGCGGTGCT GATCATCGGT GTGGCGGCGT GGATGATCTG GCGCACCCTG CGCGACCAGC GGATGGCCCA CGCGCACGAC CATGACCACG ATCACGGACA CGACGAAGCC AGGGACATCG ACACCGGCCA TGGCACGGTC CGGCTCGAAG TGTTCGAGGA TGGCGTGCCG CCGCGCTTTC GCCTCTACCA GGACCAGGCG CGCCCGCATG GCCACGCCTG GTCGGCGAGC GACGTGCACG TCGAGACGGA AAGGCCGGAC GGGACCCGGC AGTCATTCCA CTTCGTGCAA CGCGATGGCT TTGTCGAATC CGAGCAGACG ATCCCCGAGC CCCATGAATT CGTCGCCCGC CTGAGCCTCG GGCGCGACCG CCATCGCCAC AGCTACGACG TCGAGTTCGT CGAGCACGGC CACGACCACC CTCACCACGC CATCCAGGAC TACGACGGAC TGGACCTCTC CGCCCCGGGC TACCAGGATG CCCACGAACT GGCGCATGCC AACGACATCC GCCGCCGCTT CGCCAACCGG CACGTCACGA CCGGCCAGAT CATCGTTTTC GGCCTCACCG GCGGCCTGAT CCCCTGCCCC GCCTCCATCA CGGTGCTGTT GCTCTGCCTG CAGCTCAAGC AGATCACGCT GGGGGCAACG CTTGTGCTGT GCTTCAGCAT CGGACTGGCC ATGACGATGG TGGCGTCCGG CGCGCTGGCC GCACTGAGCG TGAAGCACGT ATCCAAGCGC TGGAGCGGAT TCGGCGACTT CGCGCGAAAG GCGCCGTACT TCTCCGGGGC GCTGATCGTG CTGGTGGGCC TGTATGTCGG CTGGCAGGGA TTGCGGGGCC TGACTAGCGT GTGA
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Protein sequence | MTEFSTLLQQ GNAWLFIPSA ILLGALHGLE PGHSKTMMAA FIVAIRGTLT QAVLLGLSAT ISHTAVVWAV AMAGLYFGRN WNAEATEPYF QVASAVLIIG VAAWMIWRTL RDQRMAHAHD HDHDHGHDEA RDIDTGHGTV RLEVFEDGVP PRFRLYQDQA RPHGHAWSAS DVHVETERPD GTRQSFHFVQ RDGFVESEQT IPEPHEFVAR LSLGRDRHRH SYDVEFVEHG HDHPHHAIQD YDGLDLSAPG YQDAHELAHA NDIRRRFANR HVTTGQIIVF GLTGGLIPCP ASITVLLLCL QLKQITLGAT LVLCFSIGLA MTMVASGALA ALSVKHVSKR WSGFGDFARK APYFSGALIV LVGLYVGWQG LRGLTSV
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