Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS02977 |
Symbol | RSp0143 |
ID | 1222546 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 163855 |
End bp | 166119 |
Gene Length | 2265 bp |
Protein Length | 754 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637240002 |
Product | putative GSPD-related protein |
Protein accession | NP_521704 |
Protein GI | 17548364 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.220061 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACCG GACAGGCATT GATTCGCACG CTTCTCGTCG CCTGCATGGC CGTGTCAGTC GCCGGTTGCG GCGAATTGCC GCCCTATCGC GAAGGTGAAG CGCTGAGCGC CGAAGGCAAG AACGAAGCCA GTCTCGAACG ATTCGAGACC GCCGCCAAGG CCCAACCGAC CAACGCGCGC TATCGTGCGG CCTATCTGCA GGCAAGGGAC AGGACCGTCA ACGGTTGGCT GGACGAAGCG GAACGGCTGC GTCAGACCGG CAAGCCCGAC GCGGCGCGCA AGATGTACGA ACGTGTCCTG GCGCTTGCGC CGGAAAACGC GCGAGCGCGG GCGGGCCTTG AGCAAGGGGA GCGTGACCGG CGGCACGCCA ACCTGGTGCA ACAGGCCGAG GATGCCCTCA AGAAAGGCGA GCGCGATACG GCACTGGCCA AGCTGCACCT CGCCCTGGCA GAAAACCAGC AATTCAGGCC GGCACTGGCC CTTCAGCAGC GGATCGAACA ACCCACCGGA GACAGCCCGG AGCGCGCATT GTCGGCGGCG TTCCGCAAGC CGATCAGCCT CGAATTCCGC GACGCGCAGA TGCGGCAGGT GTTCGAGGTG CTGTCTCGTG CGTCGGGCCT GAACTTCGTG TTCGACAAGG ATGTCCGCAC CGATCAGAAG GTGACGGTAT TCCTGCGCAA CAGTACGGTC GCCAACGTCG TCAACACGGT GCTCCTGACG AATCAGCTCG AACAGCGGGT GCTGGACGGC AACTCGATCC TGATCTATCC CAACACACCG GCCAAGCAGC GCGACTACCA GCCGCTGACC GTGCGCACGT TCGTGCTGAG CAATAGCGAC GCGAAGGATG TCGCCAATAC CGTCAAGACG ATCCTGAAGA CGCGCGACAT TGTCGTCGAC GAAAAGCGCA ACATGATCGT GATGCGGGAT ACCCCCGATG CCATCCAGGC AGCCGAAAAG CTGGTCGCCG TGCACGAGAT GCCGGAACCG GAGGTGATGC TGGAGGTGGA GATTCTCGAG GTCAAGCGTT CGCGCCTGCA GGACCTGGGT ATCCAGTTGC CGAGCCAGCT GTCGCTGACG CCGCTGGCCA GCAGCTCCGG CGGCACCTTG ACACTTGACG ACCTGAGACA CCTGAATCCC ACGCGTATCG GCGCAACGGT CAGCCCCTTG AACGTCAATG TCAACGCGGC TGTCACCGAC ACCAATGTCC TGGCGAATCC GCGTGTACGG ACCCGGAACA AGGAAAAGGC ACGCATCCAG GTCGGCCAGC GTGTGCCGAA TGTCACCACC ACGTCAACTG CCACGGGCTT TGTTGCCGAA AACGTCCAAT ACGTCGACGT CGGCCTAAAG CTGGAAGTGG AACCAACGGT CACGCCGGAC AACGAGGTCA CCATCCGCAT CAATCTGGAG GTCAGCGACA TCATCTCGCA GGTGCAGACC AAGAGCGGTT CCATTGCCTA CGAGATCGGA ACACGAAACG CCACGACACT GCTCCGGCTC AAGGATGGCG AAAACCAGAT ACTGGCGGGT CTGATCCAGG ATGAAGACCG GGTCTCGGGC AATCGTGTCC CCGGCCTGGG CGACATCCCC GCGCTGGGCA GACTGTTCGG CGCCCAGAGC GACAACAAGC TCAAATCGGA GATCGTCCTG TCGATCACGC CCCGCGTCAT CCGCCCTGCG CAGCGGCCGA ACCTGGGCTC TGCCGAGTTC GACAGCGGTA CCGAATCGAG CTTGCGGCTC ACGTCGCCGA TGCTGCGCGA GCGGGGTGCG CCGGTACCAA GCCCTGTTGC GCCAGCCGCC GCCCCCACGC CGTCAACCGA CGCCTCCAGT ACGCCGCCAC AACCGGTAGC CGCCGCAGGC GGCGGGTCCG CGCTGACGAT CCAAGGCCCA TCGTCCGTGC CCGCCGGCTC AACCTTCGAT GTCCTGGTCA ACGTCCAGCC CGAACGCCCA TTCACCAGCC TTCCGCTCAC CCTGCAGTAC AACCCGGCCC AACTGCAGAT CATCTCGGTC ACCCCCGGCA GCCTGGTATC CGCGAACGAG GTCTTCGCAA ACAACATCGA TGCGGCCAAA GGGCTGGTCT ATATGACGAT GAATGCCAAG CAAACGCAGG GCAAGGACGG TGCGGGGAAT GTGGTGCGCC TCACCTTCAA GGCACTGGCC GCGGGCGAGA CGAGCATCCA CATGCAGGAT CAGATGCTGA TCACCCCCTC CGGGATGGCG AGCCTGAAGC CGACGGCACC GTTGGTCATG ACTGTTCAAC CATGA
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Protein sequence | MNTGQALIRT LLVACMAVSV AGCGELPPYR EGEALSAEGK NEASLERFET AAKAQPTNAR YRAAYLQARD RTVNGWLDEA ERLRQTGKPD AARKMYERVL ALAPENARAR AGLEQGERDR RHANLVQQAE DALKKGERDT ALAKLHLALA ENQQFRPALA LQQRIEQPTG DSPERALSAA FRKPISLEFR DAQMRQVFEV LSRASGLNFV FDKDVRTDQK VTVFLRNSTV ANVVNTVLLT NQLEQRVLDG NSILIYPNTP AKQRDYQPLT VRTFVLSNSD AKDVANTVKT ILKTRDIVVD EKRNMIVMRD TPDAIQAAEK LVAVHEMPEP EVMLEVEILE VKRSRLQDLG IQLPSQLSLT PLASSSGGTL TLDDLRHLNP TRIGATVSPL NVNVNAAVTD TNVLANPRVR TRNKEKARIQ VGQRVPNVTT TSTATGFVAE NVQYVDVGLK LEVEPTVTPD NEVTIRINLE VSDIISQVQT KSGSIAYEIG TRNATTLLRL KDGENQILAG LIQDEDRVSG NRVPGLGDIP ALGRLFGAQS DNKLKSEIVL SITPRVIRPA QRPNLGSAEF DSGTESSLRL TSPMLRERGA PVPSPVAPAA APTPSTDASS TPPQPVAAAG GGSALTIQGP SSVPAGSTFD VLVNVQPERP FTSLPLTLQY NPAQLQIISV TPGSLVSANE VFANNIDAAK GLVYMTMNAK QTQGKDGAGN VVRLTFKALA AGETSIHMQD QMLITPSGMA SLKPTAPLVM TVQP
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