Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS00875 |
Symbol | RSp0418 |
ID | 1222725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 530309 |
End bp | 531331 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637240278 |
Product | ornithine cyclodeaminase protein |
Protein accession | NP_521979 |
Protein GI | 17548639 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0180159 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCATC CAGCCGATAC CACCGGTCTG CTTTACCTTG GCCGCCAGGA CCTGGTCGCC CTCGGCGGCG ACCGCTCGCA GCCTTACGTC GACGCGATCA CCGAAGGGCT CGCCCTGCAT GCGAAGGACG ACTTCGTGCA GCCGCTCAAG CCGTACCTGC GCTGGCCCGG CGCCGACCAC ATCGCCGACC GCATCATCGC GATGCCGTGC TATGTCGGCG GCGAGAAGCC GATCGCGGGG CTGAAGTGGA TCGGCAGCCG CCAGCACAAT CCGTCGCGCT TCCAGCTCGA ACGCGCGAGC GCCGTGATCG TGCTCAACGA CGCCGACACC AACTATCCCG TCGCCATCAT GGAAGGCGGC CTGATCAGCG GCATGCGCAC GGCCGCGATC AGCGCGGTCG CGACGCGGCA CCTGGCGCGC GAGGGCTTCA CCGACGTCGC CTGCATCGGC TGCGGCCCGA TCGCGCGGAT GCAGATGCAG ACGCTGATCG AGCAGTTCCC CGGCATCCGC CGCATCCATC TCTTCGATGT GTCCCGGGAC GCGATGCGCG CGTTCGGCGA GGCGCTCACG GCGCGTTTCC CGCAAGTGGC GTGCGAAGCG GCCGACAGCG CGGAGCAGGC CGTGCGCGCG GCCGACGTGA TCGTCACCTG CACCGTCACC GATTCGCCCT ATCTCGAATA CGACTGGCTG CGGCGCGGGG CCTTCGTCTG CAACGTGTCG ATCATGGACG TGCACAAGGA GGTCTACGAG AAGGCCGACA AGGTGGTCGT CGACGACTGG GATCAGTCGA ACCGCGAAAA GAAGGTCATC AACCAGCTGG TGCTCGAAGG CCGCTTCAGC CGCGAGCGCC TGCATGCCGA ACTGGGCGAG ATCGTGATCG GCGAACGCCC CGGGCGCGAG AACGACGACG AGATCATCCT GCTCAACCCG ATGGGCATGG CGATCGACGA CATGGTCTGC GCGCGCCATT TCTATCAGCT TGCCGCGCGG GCCGGTGTCG GCACGCGGCT GCCGCTGCTA TGA
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Protein sequence | MTHPADTTGL LYLGRQDLVA LGGDRSQPYV DAITEGLALH AKDDFVQPLK PYLRWPGADH IADRIIAMPC YVGGEKPIAG LKWIGSRQHN PSRFQLERAS AVIVLNDADT NYPVAIMEGG LISGMRTAAI SAVATRHLAR EGFTDVACIG CGPIARMQMQ TLIEQFPGIR RIHLFDVSRD AMRAFGEALT ARFPQVACEA ADSAEQAVRA ADVIVTCTVT DSPYLEYDWL RRGAFVCNVS IMDVHKEVYE KADKVVVDDW DQSNREKKVI NQLVLEGRFS RERLHAELGE IVIGERPGRE NDDEIILLNP MGMAIDDMVC ARHFYQLAAR AGVGTRLPLL
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