Gene RPD_3790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3790 
Symbol 
ID4024306 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4230685 
End bp4230933 
Gene Length249 bp 
Protein Length82 aa 
Translation table11 
GC content67% 
IMG OID637963994 
Producthypothetical protein 
Protein accessionYP_570912 
Protein GI91978253 
COG category[S] Function unknown 
COG ID[COG4309] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.142548 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGATG CTGCACCCGC CGCAGAGCGC GTTCTTGACG TGCGTGAGAT CCCGCCCCAT 
CAGCGCCACG AGATCATTCC GCGGCTGTTC GACAATCTGC AGCCGGGGCA GGGGATGCAG
ATCGTCGTCG ACCACGACCC ACGGCCGCTG CGGCACTTCT TCGAGCAGGT CCACGGCGAC
GATTGCCAGT GGAGCTATCT GGAGCAGGGC CCCGAGGTGT GGCGGGTTGA GCTGCGGCGG
GCTGCGTAG
 
Protein sequence
MTDAAPAAER VLDVREIPPH QRHEIIPRLF DNLQPGQGMQ IVVDHDPRPL RHFFEQVHGD 
DCQWSYLEQG PEVWRVELRR AA