| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3389 |
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| Symbol | |
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| ID | 4023901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3764973 |
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| End bp | 3765962 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963594 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_570514 |
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| Protein GI | 91977855 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.734796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00462713 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGACAGA CGATTCTCTT CGGCGGCACC AGCAAAGAGC GGCTGGTGTC GGTGGCTTCG
GCGCAGGCGC TGCACGCGGC GTTGCCCGAC GCCGAGCTGT GGTTCTGGAA CGACGACGAC
CTTGTGCACG TCGTGGCAGC CGATGCGCTG CTCGCGCATA CGCGGCCATT CGAGGAGTCG
TTTCATCCGG CGGGTGGGGG CATCGGCCCG CTCGAACGCG CACTGGATCG CGCGGCGACG
GAACAGCGCC TGCTGGTGCT CGGTCTCCAC GGTGGCGTCG CCGAGAACGG CGAACTGCAG
GCGATGTGCG AAATGCGCGG CGTGCCATTT ACCGGTTCCG GCGCCGCGGC CTCTCACGTC
GCTTTCGACA AGATCGCCGC CAAGCGCTTC GCCGCGATCG CCGGCATCCG CGCGCCGGCC
GGCATCACGC TCGACCATGC GGAGAGGGCG CTCGCGACGT ATGGCCGCCT GATCGCCAAG
CCGACCCGCG ACGGGTCCAG CTACGGCCTG TTCTTCATCG ACGCGAAACA GGACCTGGTC
GCGGTGCGCA ACGCGGCCAA GACCGAGGAC TATCTGATCG AGCCGTTCGT CTGCGGCGTC
GAGGCGACTT GCGGGGTGCT CGAACAGGCT GACGGCGCGC TGCTGGCGCT GCCGCCGGTC
GAGATCGTGC CGGCCGACGG CGGCTTCGAT TACAAAGCGA AATATCTCGC CAAATCGACC
CAGGAGATCT GTCCGGGCCG GTTCACGCCC GAGGTTTCCG CGGTGATCAT GGATTATGCC
GTGAAGGCGC ACCGGGTGAT GGGCTGCCGC GGCTATTCGC GATCGGACTT CATCGTCGCC
GCCGACGGCC CGATCTTTCT CGAGACCAAC ACTTTGCCGG GCCTGACCAA AGCGTCGCTC
TATCCCAAAG CGCTGAAGGC CCAGGGGATC TCATTCGACG ACTTCCTGCG CGGCCAGATC
GCGATCGCCG AACGAAGCGT CCGACGTTAA
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| Protein sequence | MRQTILFGGT SKERLVSVAS AQALHAALPD AELWFWNDDD LVHVVAADAL LAHTRPFEES
FHPAGGGIGP LERALDRAAT EQRLLVLGLH GGVAENGELQ AMCEMRGVPF TGSGAAASHV
AFDKIAAKRF AAIAGIRAPA GITLDHAERA LATYGRLIAK PTRDGSSYGL FFIDAKQDLV
AVRNAAKTED YLIEPFVCGV EATCGVLEQA DGALLALPPV EIVPADGGFD YKAKYLAKST
QEICPGRFTP EVSAVIMDYA VKAHRVMGCR GYSRSDFIVA ADGPIFLETN TLPGLTKASL
YPKALKAQGI SFDDFLRGQI AIAERSVRR
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