| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2421 |
|---|
| Symbol | |
|---|
| ID | 4022912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2699654 |
|---|
| End bp | 2700433 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637962614 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_569552 |
|---|
| Protein GI | 91976893 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0231267 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC GAATTCGGCT GGACGGCAGG GTGGCGCTCG TCACCGGCGC CGCGGGCGTC
ATCGGCGCCG CGACCATCCA ACTCCTCGCC GAACGCGGCG CCCGCATCGT CGCGATCGAC
CGCGATCGGC GAGCGCTCGA TCAGGTGGTT GCAGCCCTGC CCGCCTCGAC GCAGCCGCTG
GCGCTGACCG CCGACGTCAC CCAGGAAGAT CAGGTCGCAG GCTATGTCCG GACCGCGGTC
GAACGTTGTG GCCGAATCGA CGTGCTCTAC AACAATGCCG GAATCGAGGG CGACATCACC
CCGATCGTCA GCACCTCGCT CGACGGCTTC CGCCGCGTGC TCGATGTCAA CGTCATCGGC
GTGTTTCTTG GAATGAAGCA TGTGTTGCCG GTGATGCACC AGCAGAACTC CGGCAGCATC
ATCAACACCG CATCGATCGC CGGACTGATC GGCTCCAACG ACATCATCGC CTACACCGCC
AGCAAGCACG CGGTGATCGG CATGACAAAG ACCGCGGCGC TGGAATGCAG CGGCACCAAG
GTGCGCGTCA ACTGCGTCTG CCCGGGGATG ATCGACAGCC GGATGCTCAG TGCGATCGTC
GAAGGCCGCA ATCCCGGCCC TACACCGGTG CCGACCGAAA GGATCGTCGA GCGGATACCA
GCACGCCGGC TCGGCCATGC CGCCGAGGTG GCGTCGGTTG TGGCGTTCCT CGCTTCAGAC
GAAGCGAGCT ACGTGTCCGG CTCAGCCTAC ACCGTCGACG GTGGACGCAC TGCAAGCTGA
|
|---|
| Protein sequence | MTDRIRLDGR VALVTGAAGV IGAATIQLLA ERGARIVAID RDRRALDQVV AALPASTQPL
ALTADVTQED QVAGYVRTAV ERCGRIDVLY NNAGIEGDIT PIVSTSLDGF RRVLDVNVIG
VFLGMKHVLP VMHQQNSGSI INTASIAGLI GSNDIIAYTA SKHAVIGMTK TAALECSGTK
VRVNCVCPGM IDSRMLSAIV EGRNPGPTPV PTERIVERIP ARRLGHAAEV ASVVAFLASD
EASYVSGSAY TVDGGRTAS
|
|---|
| |