| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2103 |
|---|
| Symbol | |
|---|
| ID | 4022585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2353817 |
|---|
| End bp | 2354752 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637962296 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_569239 |
|---|
| Protein GI | 91976580 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.935977 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCAA CTCACAAACC GGACCGCGGC AACGCGGTCC GGTTTCGTTT TGTGCTAGGA
TCGCGGCGCA CAAAGGAGCC TGCCATGCGA TCCATTGTTA TCACCGGCGC ATCGACCGGG
ATCGGCCACG CCACGACGAA GCTGCTGCTG GCACGCGGCT TTCGGGTGTT CGGTAGCGTG
CGCAGGCAGG CCGATGCGGA TCGGCTCGAG CAGGAGTTCG GTGACGCCTT CACGCCGTTG
CTGTTCGACG TCACCGACGA AGCCGCGGTG CACGCGGCGG CAGGCGAGGT GCGCACCGCG
CTGGGTGGTG AGGCGCTGGC GGGCCTGGTC AACAATGCCG GCATCGCGGT GTCGGGCGCG
GTGATAGACC TGTCGGCCGA TGATTTCCGC CGTCAGTTCG AGGTCAATGT GATCGGCCCG
ATCATTGCCA CGCAGGCGTT CGCGCCGCTG CTCGGCACCG ATTCGACGCT GCGCGGGCCG
CCGGGTCGGA TCATCATGAT GTCGTCGATC GCGGGGAAGT TCGGCAATCC GCTGATGGCG
GCTTACTCGG CATCGAAGCA CGCGCTCAAC GGCCTGTCGG ACGGGCTGCG TCGCGAGATG
ATGCTGTTCG GCATCGATGT CGTGATCATC GCGCCCGGCG CGGTCAAGAC GCCGATCTGG
GCCAAGGCCG AGCAGGAAGA CATCTCGCGC TTCGCGAACT CGCCATTCTA CCCTGCGCTG
CAGAAGATCC GCGCGATGCT GCCGCAGATG GACGAAAGCG GCCTGCCGCC GGAGACCATC
GCGCAGCACG TGTTCGATGG GCTGACCTCG GCGTCGCCGA AAGCGCACGA CGTCATCACA
CCCGGACCGC TGCAGTTCTG GTTGTCGACC AAGCTGCCGC CGCGGTGGGT CGACAAGATC
GTCGCCAAGC GGCTTGGGCT GAGGCCGGCG AAGTAA
|
|---|
| Protein sequence | MTATHKPDRG NAVRFRFVLG SRRTKEPAMR SIVITGASTG IGHATTKLLL ARGFRVFGSV
RRQADADRLE QEFGDAFTPL LFDVTDEAAV HAAAGEVRTA LGGEALAGLV NNAGIAVSGA
VIDLSADDFR RQFEVNVIGP IIATQAFAPL LGTDSTLRGP PGRIIMMSSI AGKFGNPLMA
AYSASKHALN GLSDGLRREM MLFGIDVVII APGAVKTPIW AKAEQEDISR FANSPFYPAL
QKIRAMLPQM DESGLPPETI AQHVFDGLTS ASPKAHDVIT PGPLQFWLST KLPPRWVDKI
VAKRLGLRPA K
|
|---|
| |