| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0956 |
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| Symbol | |
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| ID | 4021431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 1075040 |
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| End bp | 1078141 |
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| Gene Length | 3102 bp |
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| Protein Length | 1033 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637961147 |
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| Product | DNA polymerase I |
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| Protein accession | YP_568095 |
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| Protein GI | 91975436 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAAT CCCCTTCGAA AGCCGCCGCG ACGCCAGCCG CCGCCACCTC CCCTGCCCCG
ATCGCCGGCA AGGCGCCGGG CAAGGGGGAT CACATCTTCC TGGTCGACGG ATCGTCCTAC
ATCTTCCGCG CCTATCACGC GCTGCCGCCG CTGAGCCGCA AATCCGACGG GTTGCAGGTC
AACGCCGTGC TCGGCTTCTG CAACATGCTG TGGAAGCTGT TGCGCGACAT GCCGCCGGAC
AACCGGCCGA CGCATCTGGC GATCATCTTC GACAAGTCGG AAGCGACGTT CCGCAACGAA
ATGTATCCCG CCTACAAGGC GCATCGGCCG CCGGCGCCCG ACGACCTGAT CCCGCAATTC
GCGCTGATCC GCGAGGCGGT GCGCGCGTTC GATCTGCCCT GTCTCGAACA GTCCGGCTTC
GAAGCCGATG ATTTGATCGC CACCTATGTG CGCGAGGCCT GCGAGGCGGG CGCGACAGCC
ACCATCGTGT CGTCCGACAA GGACCTGATG CAGCTCGTGA CCGACTGCGT CACGATGTAC
GACACCATGA AGGACCGCCG CATCGGCGTT GCCGAAGTGA TCGAGAAATT CGGCGTGCCG
CCGGATAAAG TCGTCGAGGT CCAGGCGCTG GCCGGCGACA GCGTCGACAA CGTGCCGGGC
GTGCCCGGCA TCGGCATCAA GACCGCGGCG CAATTGATTA CCGAATACGG CGATCTCGAA
ACCTTGCTGG CGCGCGCCGG AGAGATCAAG CAGCCGAAGC GGCGCGAGGC GCTCATCGAG
AACGCCGAGA AGGCGCGGAT CTCGCGCAAG CTCGTCTTGC TCGATGATCA CGTCAAACTC
GACGTGCCGC TCGACGAGCT CGCGGTGCAC GAGCCCGATG CGCGAAAGCT GATCTCGTTT
CTCAAGGCGA TGGAATTCAC CACGCTGACG CGGCGGGTCG CCGACTACGC GCAGATCGAT
CCGTCGGATG TCGAGGCGGA AGCCGCGCTG AAGTCTTCAC CTCTCCCGCT TGCGGGGGAA
GTCGGCGCGC GTAGCGCGAC GGGTGGGGGC ACTGCCGCAA GCGGGGACCT GTTTTCGGAG
CAAGTGCCCT CAACCCAGCC CTCTCCCGCA AGCGGGAGAG GGAGCGCGCA GCAATCGGGG
GAAGGTGGTG CGCTGAACGC CGGGCGTGGG CGCGACGGCA GGCCGGGCGA GGTTCTGTCG
CCGCAGATCC TCGCCGCCAG GCGCGCCGAG ACCGCGCGAA AAATTCCGGT CGATCGCACC
GCATACAAGA CGATCCGGAC GCTCGACGAA TTGCACGGCT GGATCGCACG CATCCACGAC
GCAGGCTTCG TCGCGGTCGA CGCCATCGCG ACCTCGATCG ATCCGATGCA GGCGGAGCTT
TGCGGCATTG CCCTGGCGCT GGCGCCGAAT GATGCGGCCT ACATCCCGCT CGGCCATCGT
CAGACCGGCG ACGGAAGCGG CCTGTTCGCC GCGGGACTCG CGCCCGACCA GCTCGGCGCG
CGCGAGGCGC TGGATGCCTT GAAGCCGCTG CTGGAATCTG CCGGCCTCGC CAAGATCGGC
TTCAACATCA AGTTCACCGC AGTGTTGCTG GCGCAGCACG GCATCACGTT GCGCAACATC
GACGATCTGC AGCTGATGTC CTACGCGCTC GACGCCGGCC GCGGCAGCCA CGGACTCGAT
GCGCTGAGCG AGAGCAATCT CGGCCACACC CTGCACGCGC TCGGCGAACT CACCGGCAGC
GGCAAGGCAA AGATCGGTTT CGATCAGGTG CCGATCGAGC GCGCCACCGA ATATGCGGGC
GAGCGCGCCG ACGTGGCGCT GCGGCTATGG CGGGTGCTGA AGCCGCGGCT GGTCGCCGAG
CGGATGATGG CCGTGTACGA GACGCTGGAG CGGCCATTGG TCGGCGTGCT GGCGCGGATG
GAACGGCGCG GCATCTCGAT CGATCGAAGC GTGCTATCGC GGCTGTCGGC CGATTTCGCC
CAGACCGCGG CGCGGATCGA AGCGGAGATT CGCGAACTCG CCGGCGAAGA CATCAACATC
GGCAGTCCGA AGCAGCTCGG CGACATCCTG TTCGGCAAGA TGGGTCTGCC GGGCGGCAGC
AAGACCAAGA CCGGCGCGTG GTCGACCTCG GCGCAGGTGC TCGACGAACT CGCCGAACAG
GGCCATGAAT TTCCAAGGAA GATTCTCGAC TGGCGACAGG TGAGCAAGCT GCGCTCGACC
TACACCGACG CGCTGCCGAA CTACGTGCAT CCGCAGACGC AACGGGTCCA CACCACTTAC
GCGCTCGCCG CCACCACCAC CGGCCGGCTG TCGTCGAACG AGCCGAATTT GCAGAACATC
CCGGTGCGCA CCGAGGACGG CCGCAAGATT CGCCGCGCCT TCATCGCATC GCCGGGCTAC
AAACTGGTGT CGGCGGACTA CTCCCAGATC GAGCTGCGAT TGCTGTCCGA GGTCGCCGAG
GTGCCGGCGC TGCGCAAGGC GTTCCAAGAC GGCATCGACA TCCACGCCAT GACCGCGTCG
GAAATGTTCG GCGTGCCGGT CGAGGGCATG CCGTCGGAAA TCCGCCGCCG CGCCAAGGCG
ATCAATTTCG GCATCATCTA CGGCATCTCG GCGTTCGGCC TCGCCAACCA GCTCGGCATC
CCGCGCGAGG AGGCCGGCGC CTATATCAAG CGCTACTTCG AGCGCTTCCC CGGCATCCGG
GCCTATATGG ACGAGACCCG CGATTTCTGC CGGGCTCACG GCTATGTCGA GACGCTGTTC
GGCCGGAAAT GTCACTACCC GGACATCAAG GCGTCGAATC CGTCGATCCG CGCCTTCAAC
GAACGCGCCG CGATCAACGC CCGGCTGCAG GGCTCCGCCG CCGACATCAT CCGCCGCGCC
ATGGGGCGGA TGGAGGACGC GCTGGCGGAG AAGAAGCTCA GCGCGCAGAT GCTGCTGCAG
GTCCACGACG AGCTGATCTT CGAAGTGCCC GACGACGAGG TCGCCGCGAC GCTGCCGGTG
GTCCGGCACG TGATGCAGGA TGCGCCGTTC CCGGCGGTGC TGCTGAACGT GCCGCTACAG
GTCGACGCGC GGGCCGCGGA CAACTGGGAC GAGGCGCATT GA
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| Protein sequence | MPKSPSKAAA TPAAATSPAP IAGKAPGKGD HIFLVDGSSY IFRAYHALPP LSRKSDGLQV
NAVLGFCNML WKLLRDMPPD NRPTHLAIIF DKSEATFRNE MYPAYKAHRP PAPDDLIPQF
ALIREAVRAF DLPCLEQSGF EADDLIATYV REACEAGATA TIVSSDKDLM QLVTDCVTMY
DTMKDRRIGV AEVIEKFGVP PDKVVEVQAL AGDSVDNVPG VPGIGIKTAA QLITEYGDLE
TLLARAGEIK QPKRREALIE NAEKARISRK LVLLDDHVKL DVPLDELAVH EPDARKLISF
LKAMEFTTLT RRVADYAQID PSDVEAEAAL KSSPLPLAGE VGARSATGGG TAASGDLFSE
QVPSTQPSPA SGRGSAQQSG EGGALNAGRG RDGRPGEVLS PQILAARRAE TARKIPVDRT
AYKTIRTLDE LHGWIARIHD AGFVAVDAIA TSIDPMQAEL CGIALALAPN DAAYIPLGHR
QTGDGSGLFA AGLAPDQLGA REALDALKPL LESAGLAKIG FNIKFTAVLL AQHGITLRNI
DDLQLMSYAL DAGRGSHGLD ALSESNLGHT LHALGELTGS GKAKIGFDQV PIERATEYAG
ERADVALRLW RVLKPRLVAE RMMAVYETLE RPLVGVLARM ERRGISIDRS VLSRLSADFA
QTAARIEAEI RELAGEDINI GSPKQLGDIL FGKMGLPGGS KTKTGAWSTS AQVLDELAEQ
GHEFPRKILD WRQVSKLRST YTDALPNYVH PQTQRVHTTY ALAATTTGRL SSNEPNLQNI
PVRTEDGRKI RRAFIASPGY KLVSADYSQI ELRLLSEVAE VPALRKAFQD GIDIHAMTAS
EMFGVPVEGM PSEIRRRAKA INFGIIYGIS AFGLANQLGI PREEAGAYIK RYFERFPGIR
AYMDETRDFC RAHGYVETLF GRKCHYPDIK ASNPSIRAFN ERAAINARLQ GSAADIIRRA
MGRMEDALAE KKLSAQMLLQ VHDELIFEVP DDEVAATLPV VRHVMQDAPF PAVLLNVPLQ
VDARAADNWD EAH
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