| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4488 |
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| Symbol | |
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| ID | 3972403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4997120 |
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| End bp | 4998019 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637927599 |
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| Product | CRISPR-associated Cas1 family protein |
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| Protein accession | YP_534330 |
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| Protein GI | 90425960 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03639] CRISPR-associated endonuclease Cas1, NMENI subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.155164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.116013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTGGC GAGGCCTGCA CCTGACGCAG GCGGCAAGGC TGTCGCTTGC CGACGGTCAG
GTTTGCGTCA GACAGGATGC GGGCGAAGTG CGGCTCGCAC TGGAAGATAT TGCCTGGATC
GTGATCGACA CGCCGCAGGC GACGCTGTCG AGCGCGCTGA TGAGTGCGTG CATGGACGCC
GGCGTCGTGC TGATCTTTAC CGACGAGCGG CACACGCCAT CGGGCGTTGC CTTGCCGTTT
CATCGTCACC ATCGCCAGGG CGCGATCGCG AAGCTTCAGT TCGACGCCAA GGACGGCGTG
AAGCGGCGGC TGTGGCAAGC CATCATTCGC CGCAAGATTC TCAATCAGGC GGCTTCGCTC
TCGGTTCTTA ACCGCCAGAA TTCAGAGACT CTCGCGGAGA TTGCGCGTCA TGTCGAGCCG
GGCGATCCGG AGAACGTCGA GGCCCGCGCG GCGCGCTTCT ATTGGGGCCG TCTGTTTGGG
GATTTCGTGC GCGACGACGA GGGTGATCTT CGCAACAAAA TGCTGAACTA CGGTTATGCC
GTCATGCGCG CCGGCGTTGC GCGGGCGCTG GTCGCCTGCG GATTTCTTCC GGCGTTCGGT
TTGAAGCACG AGAGCGCGGC CAATGCTTTC AACCTCGCGG ACGATATCGT CGAGCCGTTC
CGGCCGTTTG TCGATGGTCT CGCATGGACG ACTCTCGGTG ATCGCGTGGC CAAGAACGGC
GATCTCACGC TGGATGACCG TCGCGCCATG GCCGGCGTGC TGCTGATGAA TGGCCGGGTC
GGGGACGCCA AGGTGTCGCT TCTGGTTGCC GCGGAAATGG CCTCCGCCAG CCTCTGCCGT
GCGCTGGAGT TCGAAAAGCC GGCGTTGCTC GAATTGCCGG AATTGGAGCG CATTTCATGA
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| Protein sequence | MAWRGLHLTQ AARLSLADGQ VCVRQDAGEV RLALEDIAWI VIDTPQATLS SALMSACMDA
GVVLIFTDER HTPSGVALPF HRHHRQGAIA KLQFDAKDGV KRRLWQAIIR RKILNQAASL
SVLNRQNSET LAEIARHVEP GDPENVEARA ARFYWGRLFG DFVRDDEGDL RNKMLNYGYA
VMRAGVARAL VACGFLPAFG LKHESAANAF NLADDIVEPF RPFVDGLAWT TLGDRVAKNG
DLTLDDRRAM AGVLLMNGRV GDAKVSLLVA AEMASASLCR ALEFEKPALL ELPELERIS
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