| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3013 |
|---|
| Symbol | |
|---|
| ID | 3973620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3309436 |
|---|
| End bp | 3310197 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637926124 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_532877 |
|---|
| Protein GI | 90424507 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.47277 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTCG GATTGAAAGG CGCAAAAGTG CTGGTGACCG GCGGCACCAA AGGGATCGGC
CGGGCCATCG CCGAAACCTT CGCCACTGAG GGCGCGGATG TCGGCGTCTG CGCCCGTAGC
GCGGCGGACG TCGAGAGCAC CGTCGCTGCG CTGAAAGCCA TGGGCGTTGC AGCCTATGGC
GGCGTGGCGG ACGTGGCTGA CGCCACGGCG CTGAAGGCCT GGGTCGAGAC GATGGCGAAA
CAGCTCGGCG GGGTCGACGT CGTGGTCGCC AATGTCAGCG CGCTGGCGAT CGGGCAAGAT
GACGAAAGTT GGGAGAAGGA ATTTGCCACC GACATGATGG GCACGGTGCG GCTGGTCAAC
GCCGCGATGC CTTATCTTGA ATGCAGCGAT GCCGCGGCGA TCGTCACGGT GGCGAGCGTC
TCAGGCCGCG AGATCGATTT CGCTTGCGGT CCCTATGGGA CTTTCAAGGC GGCGATCATC
CATTATACGC AAGGACTGGC CTATCAACTC GCCGGCAAGA ACATTCGCGC CAATTCGGTA
TCGCCCGGCA ACACCTATTT CGAAGGTGGC GTGTGGGACC AGATCAAGCA CGGCAATCCG
GAGCTTTACA ACACAGCGCT GGTGCTCAAT CCCACCGGCC GGATGGGGAC GCCGCAAGAA
ATGGCCAATG CGGTGGTGTT CCTCGCCAGT CGCGCGGCGA GCTTCATCAC CGGAACCAAT
TTGGTCGTCG ACGGCGCGCT GACCCGGGGT GTGCAGTTCT GA
|
|---|
| Protein sequence | MDLGLKGAKV LVTGGTKGIG RAIAETFATE GADVGVCARS AADVESTVAA LKAMGVAAYG
GVADVADATA LKAWVETMAK QLGGVDVVVA NVSALAIGQD DESWEKEFAT DMMGTVRLVN
AAMPYLECSD AAAIVTVASV SGREIDFACG PYGTFKAAII HYTQGLAYQL AGKNIRANSV
SPGNTYFEGG VWDQIKHGNP ELYNTALVLN PTGRMGTPQE MANAVVFLAS RAASFITGTN
LVVDGALTRG VQF
|
|---|
| |