More than 300 homologs were found in PanDaTox collection
for query gene RPC_3013 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_3013  short-chain dehydrogenase/reductase SDR  100 
 
 
253 aa  511  1e-144  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.47277 
 
 
-
 
NC_007958  RPD_4287  short-chain dehydrogenase/reductase SDR  84.98 
 
 
253 aa  443  1e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  hitchhiker  0.00908488 
 
 
-
 
NC_011004  Rpal_2670  short-chain dehydrogenase/reductase SDR  81.82 
 
 
253 aa  423  1e-117  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.243755  n/a   
 
 
-
 
NC_009484  Acry_1422  short-chain dehydrogenase/reductase SDR  67.59 
 
 
253 aa  361  8e-99  Acidiphilium cryptum JF-5  Bacteria  normal  0.182902  n/a   
 
 
-
 
NC_010676  Bphyt_5751  short-chain dehydrogenase/reductase SDR  68.9 
 
 
254 aa  353  2e-96  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0937136  normal 
 
 
-
 
NC_010505  Mrad2831_3316  short-chain dehydrogenase/reductase SDR  69.17 
 
 
253 aa  341  5e-93  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2687  short-chain dehydrogenase/reductase SDR  64.43 
 
 
253 aa  322  4e-87  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2657  short-chain dehydrogenase/reductase SDR  64.43 
 
 
253 aa  322  4e-87  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2702  short-chain dehydrogenase/reductase SDR  64.43 
 
 
253 aa  322  4e-87  Mycobacterium sp. KMS  Bacteria  normal  normal  0.0205678 
 
 
-
 
NC_009338  Mflv_5148  short-chain dehydrogenase/reductase SDR  65.22 
 
 
253 aa  311  5.999999999999999e-84  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.398999  normal  0.903635 
 
 
-
 
NC_008726  Mvan_1185  short-chain dehydrogenase/reductase SDR  61.26 
 
 
242 aa  308  4e-83  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_1965  short-chain dehydrogenase/reductase SDR  60.87 
 
 
253 aa  303  1.0000000000000001e-81  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.164204  n/a   
 
 
-
 
NC_012560  Avin_12220  Short-chain dehydrogenase/reductase SDR  56.52 
 
 
250 aa  285  2.9999999999999996e-76  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5862  putative 3-ketoacyl-CoA reductase  59.36 
 
 
251 aa  282  3.0000000000000004e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0501  short-chain dehydrogenase/reductase SDR  53.88 
 
 
256 aa  271  8.000000000000001e-72  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.472606 
 
 
-
 
NC_010501  PputW619_2609  short-chain dehydrogenase/reductase SDR  52.57 
 
 
250 aa  265  5e-70  Pseudomonas putida W619  Bacteria  normal  normal  0.328906 
 
 
-
 
NC_008463  PA14_10840  putative dehydrogenase  52.57 
 
 
250 aa  262  4.999999999999999e-69  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000000000000391035  normal 
 
 
-
 
NC_014210  Ndas_2776  short-chain dehydrogenase/reductase SDR  44 
 
 
253 aa  204  7e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.627467 
 
 
-
 
NC_009427  Saro_3486  short-chain dehydrogenase/reductase SDR  44.09 
 
 
253 aa  201  9.999999999999999e-51  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1841  putative 3-ketoacyl-CoA reductase  45.56 
 
 
250 aa  201  9.999999999999999e-51  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1734  short-chain dehydrogenase/reductase SDR  42.74 
 
 
247 aa  196  3e-49  Acidiphilium cryptum JF-5  Bacteria  normal  0.798961  n/a   
 
 
-
 
NC_009511  Swit_2272  short-chain dehydrogenase/reductase SDR  40.71 
 
 
253 aa  185  5e-46  Sphingomonas wittichii RW1  Bacteria  normal  0.851754  normal  0.710684 
 
 
-
 
NC_011071  Smal_1727  short-chain dehydrogenase/reductase SDR  38.68 
 
 
279 aa  171  7.999999999999999e-42  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.507862  normal  0.704803 
 
 
-
 
NC_013501  Rmar_2036  short-chain dehydrogenase/reductase SDR  35.77 
 
 
258 aa  147  1.0000000000000001e-34  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_0052  short-chain dehydrogenase/reductase SDR  35.69 
 
 
259 aa  147  2.0000000000000003e-34  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5001  short-chain dehydrogenase/reductase SDR  38.13 
 
 
256 aa  144  1e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.46394 
 
 
-
 
NC_011761  AFE_2225  glucose 1-dehydrogenase, putative  36.86 
 
 
261 aa  140  1.9999999999999998e-32  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1879  short-chain dehydrogenase/reductase SDR  36.86 
 
 
261 aa  140  1.9999999999999998e-32  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.828765 
 
 
-
 
NC_010322  PputGB1_1794  3-ketoacyl-(acyl-carrier-protein) reductase  36.84 
 
 
257 aa  139  3.9999999999999997e-32  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2033  short-chain dehydrogenase/reductase SDR  37.89 
 
 
256 aa  136  2e-31  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.00849421 
 
 
-
 
NC_007760  Adeh_2760  short-chain dehydrogenase/reductase SDR  39.84 
 
 
256 aa  135  5e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  hitchhiker  0.0058487  n/a   
 
 
-
 
NC_011145  AnaeK_2852  short-chain dehydrogenase/reductase SDR  38.67 
 
 
256 aa  134  1.9999999999999998e-30  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2720  short-chain dehydrogenase/reductase SDR  36.82 
 
 
256 aa  133  3e-30  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011737  PCC7424_5536  short-chain dehydrogenase/reductase SDR  35.1 
 
 
254 aa  133  3e-30  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0819159 
 
 
-
 
NC_011891  A2cp1_2944  short-chain dehydrogenase/reductase SDR  38.28 
 
 
256 aa  131  7.999999999999999e-30  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0311  Short-chain dehydrogenase/reductase SDR  35.74 
 
 
262 aa  130  2.0000000000000002e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0963  short-chain dehydrogenase/reductase SDR  35.69 
 
 
258 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5573  short chain dehydrogenase  36.59 
 
 
259 aa  127  2.0000000000000002e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.590665  normal 
 
 
-
 
NC_010644  Emin_0659  3-oxoacyl-(acyl-carrier-protein) reductase  31.98 
 
 
245 aa  126  4.0000000000000003e-28  Elusimicrobium minutum Pei191  Bacteria  normal  0.372694  normal 
 
 
-
 
NC_013510  Tcur_2371  short-chain dehydrogenase/reductase SDR  37.65 
 
 
256 aa  126  4.0000000000000003e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0429161  n/a   
 
 
-
 
NC_009719  Plav_0483  short-chain dehydrogenase/reductase SDR  34.98 
 
 
262 aa  125  6e-28  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_0923  short-chain dehydrogenase/reductase SDR  30.92 
 
 
261 aa  125  8.000000000000001e-28  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3338  tropinone reductase  34.29 
 
 
267 aa  124  1e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0617958 
 
 
-
 
NC_013411  GYMC61_1799  short-chain dehydrogenase/reductase SDR  31.56 
 
 
261 aa  124  1e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012803  Mlut_06640  short-chain alcohol dehydrogenase like protein  35.46 
 
 
309 aa  123  2e-27  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1783  3-ketoacyl-(acyl-carrier-protein) reductase  32.13 
 
 
255 aa  124  2e-27  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000332127  n/a   
 
 
-
 
NC_013172  Bfae_19840  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  35.34 
 
 
297 aa  123  3e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1235  short chain dehydrogenase  34.96 
 
 
259 aa  123  3e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.183265  normal  0.0279411 
 
 
-
 
NC_008786  Veis_3594  short-chain dehydrogenase/reductase SDR  35.41 
 
 
261 aa  123  3e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.806821  normal  0.214566 
 
 
-
 
NC_009077  Mjls_0179  short chain dehydrogenase  35.77 
 
 
259 aa  123  3e-27  Mycobacterium sp. JLS  Bacteria  normal  normal  0.521326 
 
 
-
 
NC_012803  Mlut_22650  short-chain alcohol dehydrogenase like protein  36.47 
 
 
306 aa  122  4e-27  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1800  3-ketoacyl-(acyl-carrier-protein) reductase  34.92 
 
 
249 aa  122  5e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0532  3-ketoacyl-(acyl-carrier-protein) reductase  34.92 
 
 
249 aa  122  5e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2905  3-ketoacyl-(acyl-carrier-protein) reductase  34.92 
 
 
249 aa  122  5e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  0.901799  n/a   
 
 
-
 
NC_009719  Plav_0548  short-chain dehydrogenase/reductase SDR  33.2 
 
 
261 aa  122  5e-27  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A2477  3-ketoacyl-(acyl-carrier-protein) reductase  34.92 
 
 
249 aa  122  5e-27  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2804  3-ketoacyl-(acyl-carrier-protein) reductase  34.92 
 
 
249 aa  122  5e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2790  3-ketoacyl-(acyl-carrier-protein) reductase  34.92 
 
 
249 aa  122  5e-27  Burkholderia pseudomallei 668  Bacteria  normal  0.570924  n/a   
 
 
-
 
NC_009076  BURPS1106A_2851  3-ketoacyl-(acyl-carrier-protein) reductase  34.92 
 
 
249 aa  122  5e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  0.238755  n/a   
 
 
-
 
NC_007953  Bxe_C0610  putative short-chain dehydrogenase/reductase  32.82 
 
 
286 aa  122  6e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0678259 
 
 
-
 
NC_008146  Mmcs_1253  short-chain dehydrogenase/reductase SDR  33.47 
 
 
256 aa  122  6e-27  Mycobacterium sp. MCS  Bacteria  normal  0.224395  n/a   
 
 
-
 
NC_008697  Noca_4841  short-chain dehydrogenase/reductase SDR  36.29 
 
 
258 aa  122  6e-27  Nocardioides sp. JS614  Bacteria  normal  0.166683  normal 
 
 
-
 
NC_008705  Mkms_1270  short-chain dehydrogenase/reductase SDR  33.47 
 
 
256 aa  122  6e-27  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2515  short-chain dehydrogenase/reductase SDR  35.71 
 
 
250 aa  122  7e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007963  Csal_2456  short-chain dehydrogenase/reductase SDR  37.35 
 
 
255 aa  121  9e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.588805  n/a   
 
 
-
 
NC_013205  Aaci_0216  short-chain dehydrogenase/reductase SDR  32.82 
 
 
260 aa  121  9.999999999999999e-27  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4366  short-chain dehydrogenase/reductase SDR  34.66 
 
 
259 aa  121  9.999999999999999e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.534322  normal 
 
 
-
 
NC_008751  Dvul_0249  3-ketoacyl-(acyl-carrier-protein) reductase  34.92 
 
 
258 aa  120  9.999999999999999e-27  Desulfovibrio vulgaris DP4  Bacteria  normal  0.0279472  normal 
 
 
-
 
NC_009972  Haur_2614  short-chain dehydrogenase/reductase SDR  33.87 
 
 
257 aa  121  9.999999999999999e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.042976  n/a   
 
 
-
 
NC_009720  Xaut_0432  short-chain dehydrogenase/reductase SDR  35.11 
 
 
258 aa  120  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.315346 
 
 
-
 
NC_009636  Smed_2459  short-chain dehydrogenase/reductase SDR  34.4 
 
 
264 aa  120  1.9999999999999998e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1925  short-chain dehydrogenase/reductase SDR  32.45 
 
 
288 aa  120  1.9999999999999998e-26  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1857  glucose 1-dehydrogenase, putative  33.6 
 
 
261 aa  120  3e-26  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.637675  n/a   
 
 
-
 
NC_008146  Mmcs_0190  short chain dehydrogenase  35.37 
 
 
259 aa  119  3e-26  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0199  short chain dehydrogenase  35.37 
 
 
259 aa  119  3e-26  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_1535  short-chain dehydrogenase/reductase SDR  33.6 
 
 
261 aa  120  3e-26  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0579067  normal  0.028281 
 
 
-
 
NC_008726  Mvan_4753  short-chain dehydrogenase/reductase SDR  35.16 
 
 
284 aa  120  3e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.163262  normal  0.97721 
 
 
-
 
NC_009077  Mjls_1280  short-chain dehydrogenase/reductase SDR  32.24 
 
 
256 aa  120  3e-26  Mycobacterium sp. JLS  Bacteria  normal  0.367673  normal  0.166116 
 
 
-
 
NC_008541  Arth_1065  short-chain dehydrogenase/reductase SDR  34.54 
 
 
297 aa  119  4.9999999999999996e-26  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2788  short-chain dehydrogenase/reductase SDR  36.25 
 
 
254 aa  119  4.9999999999999996e-26  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.743418 
 
 
-
 
NC_013440  Hoch_5651  short-chain dehydrogenase/reductase SDR  35.41 
 
 
254 aa  119  4.9999999999999996e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.507432  normal  0.250737 
 
 
-
 
NC_013093  Amir_0418  short-chain dehydrogenase/reductase SDR  36.73 
 
 
245 aa  119  6e-26  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00843006  n/a   
 
 
-
 
NC_008554  Sfum_0112  short-chain dehydrogenase/reductase SDR  30.15 
 
 
263 aa  119  6e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4528  Short-chain dehydrogenase/reductase SDR  34.26 
 
 
258 aa  118  7e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.831809  normal 
 
 
-
 
NC_012669  Bcav_2974  short-chain dehydrogenase/reductase SDR  33.47 
 
 
259 aa  118  7.999999999999999e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1373  3-oxoacyl-(acyl-carrier-protein) reductase  32.14 
 
 
248 aa  118  7.999999999999999e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.124306  normal 
 
 
-
 
NC_011988  Avi_6105  short-chain dehydrogenase/reductase  30.95 
 
 
265 aa  118  9.999999999999999e-26  Agrobacterium vitis S4  Bacteria  normal  0.542291  n/a   
 
 
-
 
NC_008228  Patl_0912  short-chain dehydrogenase/reductase SDR  33.47 
 
 
299 aa  117  9.999999999999999e-26  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0830  3-ketoacyl-(acyl-carrier-protein) reductase  32.54 
 
 
249 aa  117  9.999999999999999e-26  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0851  short-chain dehydrogenase/reductase SDR  32.28 
 
 
254 aa  117  9.999999999999999e-26  Caulobacter sp. K31  Bacteria  normal  0.0597888  normal  0.281853 
 
 
-
 
NC_013757  Gobs_3777  short-chain dehydrogenase/reductase SDR  31.3 
 
 
262 aa  117  1.9999999999999998e-25  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3337  short-chain dehydrogenase/reductase SDR  34.08 
 
 
267 aa  117  1.9999999999999998e-25  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.964929 
 
 
-
 
NC_008726  Mvan_1624  short-chain dehydrogenase/reductase SDR  33.75 
 
 
256 aa  117  1.9999999999999998e-25  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.0419778 
 
 
-
 
NC_009667  Oant_1136  short-chain dehydrogenase/reductase SDR  33.74 
 
 
249 aa  117  1.9999999999999998e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.399133  n/a   
 
 
-
 
NC_007651  BTH_I1719  3-ketoacyl-(acyl-carrier-protein) reductase  34.13 
 
 
249 aa  116  3e-25  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1505  Short-chain dehydrogenase/reductase SDR  34.13 
 
 
286 aa  117  3e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.412824 
 
 
-
 
NC_013946  Mrub_0067  short-chain dehydrogenase/reductase SDR  38.19 
 
 
254 aa  116  3e-25  Meiothermus ruber DSM 1279  Bacteria  normal  0.43127  normal  0.598293 
 
 
-
 
NC_010681  Bphyt_1098  short-chain dehydrogenase/reductase SDR  35.08 
 
 
249 aa  116  3e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3576  short-chain dehydrogenase/reductase SDR  34.55 
 
 
257 aa  115  3.9999999999999997e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  hitchhiker  0.000680094  n/a   
 
 
-
 
NC_007413  Ava_4328  Short-chain dehydrogenase/reductase SDR  30.6 
 
 
294 aa  116  3.9999999999999997e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
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