Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2995 |
Symbol | |
ID | 3973237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3277903 |
End bp | 3278766 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637926106 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_532859 |
Protein GI | 90424489 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.891675 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0342596 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGGGT ATTTCACCGA GCGAGGCGAT GAACGGAGGC GTTCATCGCG TTTTGTCGGC CTGGCCGCGG CCGCAGCCTG GCTGCTGGTG TCGTTGGGCG GGGTGGTCGC GGCCGCCCAA GAGGGCGACG GCCAAGGCGA TGTCGGTCCC GCTGCGTCGA TTGCGAACGA CGCCGATGTA GCTCCGGAGG CCGATGTTCC GACGCCTGTG GTATTCGATC CGCCGATCAC GAAGCCGCTG ACGCAAGCCG ATCTGCCGCC GAAGAGTGTG CTGTTCGGCG GCACCGCTCC GCGACACCTC AGCATCGCGT TCAGCCGCGA TTGGCGCGCC GGCCGCGACG AATACCGCAG CATTGTCGAG CGGGAGTCGC TCGCCTTCGG CATACCGCCG GCGTTGCTCG ACGCGGTGAT GGCGGTCGAG AGTCGATACG ACCCGGCCGT GATCGGCTTG GACGGTGAGA TCGGCTTGAT GCAGGTGATG CCCGCGACGG CCCGCATGCT TGGCTTCATC GGTAGCGAGG CGCAACTAGC GGTTCCGGAC GTCAATATCC ATTACGGGGC GAAGTATCTC GCGGGGGCTT GGCGGCTGGC GGGGCAGGAT CTCTGCACCG CCGCCATGAA ATATCGTGCC GGACACGGCG AGACCCGGTT CTCCGTCCGA TCGGTGGATT ACTGCATGCG CGTCCGCAAT CATCTGGCCG CGCGCGGCGC CGCGGTCACC GGCGCGGTGC CGCAGCCCAA CCTTGGTGAG ACGACCGGTC GACGACTTCG CGGTCAACCG ACGCTTTTCG GCGCCAAGCT CGATTTTGCG GCGCTGAACG CGCGGCTGCG CAGTGTGGCC GATAAGAATC CCGCGCGCCA TTGA
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Protein sequence | MPGYFTERGD ERRRSSRFVG LAAAAAWLLV SLGGVVAAAQ EGDGQGDVGP AASIANDADV APEADVPTPV VFDPPITKPL TQADLPPKSV LFGGTAPRHL SIAFSRDWRA GRDEYRSIVE RESLAFGIPP ALLDAVMAVE SRYDPAVIGL DGEIGLMQVM PATARMLGFI GSEAQLAVPD VNIHYGAKYL AGAWRLAGQD LCTAAMKYRA GHGETRFSVR SVDYCMRVRN HLAARGAAVT GAVPQPNLGE TTGRRLRGQP TLFGAKLDFA ALNARLRSVA DKNPARH
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