| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0941 |
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| Symbol | fliF |
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| ID | 3969743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1037145 |
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| End bp | 1038764 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924057 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_530830 |
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| Protein GI | 162136034 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.813919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGGGTC TGGTGAGCTT TCTAAAAGGT CTGGGCGCAG CCCGCCTGAT GGCGATGATC
GCGGTCACCG CCGCGTTGAT CGGATTCTTT GCCTTTGTCA TCATGCGGGT CACCACGCCG
CAGATGACGA CCCTGTTCAC CGACCTCAGC GTCGAGGATT CCTCCGGCAT CATCAAGGAC
TTGGAACGCC AGGCGATCCC CTTCGAAATC CGCAACGAAG GCAGCGTGAT CATGGTGCCG
AAGGACAAGG TGACGCGGCT GCGGATGAAG CTCGCCGAGG GCGGGCTGCC CAAGGGCGGC
GGCGTCGGCT ACGAGATCTT CGACAAGTCG GATGCGCTGG GCTCGACCAG CTTCGTTCAG
AACATCAATC ATCTGCGCGC CCTGGAAGGC GAGCTAGCCC GCACCATCCG GGCGATCGAC
CGGATCCAGG CCGCCCGCGT CCATCTGGTG CTGCCGGAGC GGCCGCTGTT CTCGCGCGAG
ACCCCGGAGC CGTCGGCCTC GATCGTGCTG CGGGTGCGCG GCGCGTTGGA GCCGCAGCAG
GTGCGCGCCA TCCGCCATGT CGTGGCCTCA GCGGTCAACG GGCTGAAGCC GCAGCGGGTG
TCGATCGTCG ACGAGGCCGG GCAACTGCTC GCCGACGGCG CCGCCGGCGA TCCGGCCAGC
GACGGCGCCA CCGGCGACGA GCGCCGCGCC GGTTTCGAGA AACGGATGCG TAACCAGGTC
GAGGCGATTG TCTCCTCCGT GGTCGGCAGC GGCCGGGCGC GGGTCCAGCT CACCGCCGAC
TTCGACTACA ACAAGGTGAC GCAGACTTCC GACAAGTTCG ATCCCGAAGG ACGGGTGCTG
CGCTCCAGCC AGTCGCGCGA GGAATCCTCG CAGACCGCCG CCGCCAATGA CGGCCAGGTC
ACGGTCAACA ACGAGCTTCC CGGCGCACAG GCCGGCGCCG GCGCCGCAGT GGCCCGCGAC
CAGAGCAAGA AGAGCGAAGA AACCAACAAT TATGAGATTT CGCGCGTCAC CAAGACCGAG
ATTACCGAGG CCGGACGGGT CAACAGAATC TCCGTCGCGG TGCTGGTCGA CGGCATCTAC
GGCAAGAACG ACAAGGGCGA GATGGTCTAC CAGGAGCGCA GCAAGGACCA GCTCGACCGC
ATCGCGGCGC TGGTGCGCTC TGCGATCGGC TTCGATCAGA AGCGCGGCGA CCAGGTCGAG
GTCGTCAACC TGCGGTTCGC CGAGGCGCCC TCGGTGCCGC CGGTCGCCGA GCCGGGCGGC
CTGCTCGGCA TGGTGCAATT CACGAAGGAT GATGTGATGT ATGTCATCGA GCTCGCGGTG
ATGATGCTGC TCGGCCTGGT GGTGATGTTC ATGGTGATCC GGCCGCTGGT GCGGCGGATC
CTCGCCGCCG AGCCTGGCGC CGCCGGTGCC AACGGCGTGC CGGCGCTCAC CGACGCCAGC
GGCACGGCGA TCGGGCCCGA CGGCCTGCCG CTGGTCGCGC CCGGGCCCAA CATGATCGAC
ATCGCCCAGG TGCAGGGACA GGTCCACGCC CAGTCGGTGC ACCGCGTCGG CGAACTGGCC
GACCGCAACC CCAACGAAAC CGCCGCCATT GTTCGCCAAT GGCTTCAGGA GCCGGCGTAA
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| Protein sequence | MQGLVSFLKG LGAARLMAMI AVTAALIGFF AFVIMRVTTP QMTTLFTDLS VEDSSGIIKD
LERQAIPFEI RNEGSVIMVP KDKVTRLRMK LAEGGLPKGG GVGYEIFDKS DALGSTSFVQ
NINHLRALEG ELARTIRAID RIQAARVHLV LPERPLFSRE TPEPSASIVL RVRGALEPQQ
VRAIRHVVAS AVNGLKPQRV SIVDEAGQLL ADGAAGDPAS DGATGDERRA GFEKRMRNQV
EAIVSSVVGS GRARVQLTAD FDYNKVTQTS DKFDPEGRVL RSSQSREESS QTAAANDGQV
TVNNELPGAQ AGAGAAVARD QSKKSEETNN YEISRVTKTE ITEAGRVNRI SVAVLVDGIY
GKNDKGEMVY QERSKDQLDR IAALVRSAIG FDQKRGDQVE VVNLRFAEAP SVPPVAEPGG
LLGMVQFTKD DVMYVIELAV MMLLGLVVMF MVIRPLVRRI LAAEPGAAGA NGVPALTDAS
GTAIGPDGLP LVAPGPNMID IAQVQGQVHA QSVHRVGELA DRNPNETAAI VRQWLQEPA
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