| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2223 |
|---|
| Symbol | |
|---|
| ID | 3907965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2536606 |
|---|
| End bp | 2537349 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637884118 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_485839 |
|---|
| Protein GI | 86749343 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.692073 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.323569 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAAGC TCGGTGACGA TTGGAAGAGT GGTCAGGCGG CTGACGAGGA TGACGTCGTC
GGCCGATCGG GCAGGCGGTC AGCGCTTCGT TACGGGGCGG CGCTGGCGAT TCTCACGGTG
CTTTTCGTCG GCGGCTACCG CTTTCTGTTT GATGGCGACG ACCTGCCGCC GCCGCGTCAG
GTCCACGAGA TCACCATCGT CAACCTGCCG CCGCCGCCAC CGCCGCCTCC GGCCCCTCCG
CCGCCCGAGC AGAAGATGAT CGAGCAGCCG AAGATGGCGG AGCAGGAGTT CAAAGAGGAG
CAGCCGATCG AGAAACCGCA GGACGAGCCG GTCAAGGAAG CCAAGAACAG TGAGCCACCC
GGACCGCTGT CGCTCGACGC CAAGCCGACC GGCCCCGGCG ACCTGTTCAA CCTTGGCGGC
AAGCCCGGCG GCAACCCTTA TGGCGGTGGG GGCGGCGGAG GCAGCCGCTG GGGCTGGTAC
GCTTCGATCG TGCAGTCGCA GATCGAAAGC GCGCTGCGCG GGAACCAGCG GACGCAGCGG
GCGGTACTCC AGGTGCAGAT CCGCTTGTGG GCGGACAGCA CCGGCAAGAT CAGTCGCGTG
CAACTGGTGT CGTCGACCGG CGACGCCGAA CTCGACCGCA TCATCCGCGA CGACGTGCTC
GGCAGCCTGA CGTTGCGCGA GCCTCCGCCC AAAGACATGC CGATGCCGAT GGTGACGCGC
GTGACCGCGC GTCGGCCGAG CTGA
|
|---|
| Protein sequence | MSKLGDDWKS GQAADEDDVV GRSGRRSALR YGAALAILTV LFVGGYRFLF DGDDLPPPRQ
VHEITIVNLP PPPPPPPAPP PPEQKMIEQP KMAEQEFKEE QPIEKPQDEP VKEAKNSEPP
GPLSLDAKPT GPGDLFNLGG KPGGNPYGGG GGGGSRWGWY ASIVQSQIES ALRGNQRTQR
AVLQVQIRLW ADSTGKISRV QLVSSTGDAE LDRIIRDDVL GSLTLREPPP KDMPMPMVTR
VTARRPS
|
|---|
| |