Gene RPB_1840 details

Gene Information

• Locus tag: RPB_1840
• ID: 3908999
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris HaA2
• Kingdom: Bacteria
• Replicon accession: NC_007778
• Strand: -
• Start bp: 2106377
• End bp: 2107159
• Gene Length: 783 bp
• Protein Length: 260 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637883734
• Product: hypothetical protein
• Protein accession: YP_485459
• Protein GI: 86748963

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 5
• Fosmid unclonability p-value: 0.0085031
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTCACTTC CACGCAAGCG CTTCCGGATC GAAGAACTCA CGCTCGGCAG CGCGCCCCCG 
CTCGCACCGA TCGACTGTGA AGCGGGGCCG ACTCACCACG ACATCATGGC GGAGCTGCGC 
GCGATCCGCT CGCAGATCGT CGGCGGCGGA GGCGGAGCCG TCGCCACCGG CAGCGGCACG 
CAGCAGATCA ACGCGGCCGC GGCCGCAGAG GCCGCGGAAG CCAAGGCACT GCTCGCGACC 
TACCGCGCTC AGATCGAACA GTTCGAGAAG CTCAGGGTCG AACTCGACCT GATCCACAAC 
GCGATCGACC AGACCAAGCG CGAGATCGCG GTGCTGCACA CCAAGAGCTT CAACGGCGAG 
GAGATGGCCA AGGTCAACGG CGAACTCGGC GCCGTCGTCG GCGGCACCGA GGAAGCCACC 
CAGCAGATCC TCGAGGCCGC CGAAGCGATC GATCAGGCGG CCACCGCGCT CGGCAAGGTC 
ACCTCTGTCG ATCAGCAGAA GGCGCTGAGC GAAGAGATCC AGGAACGCGT CATCGCGATC 
TTCGAGGCTT GCAACTTCCA GGACCTCACC GGCCAGCGCA TCAGCAAGGT GATGACCACG 
ATGAAGTTCA TCGAACATCA CATCATCACG ATGATGGACA TCTGGGGCGG CGTCGACGCG 
ATCAAGGCGC ACGCGCCGCC GATCGTCGAC ACCCGCGAAG GCGACGACCG GCTGCTCAAC 
GGGCCGAAGC TCGACGACGA GGGACACGCC TCGCAGGACG ACATCGACGC GATGTTCAAC 
TGA 

 

Protein sequence

MSLPRKRFRI EELTLGSAPP LAPIDCEAGP THHDIMAELR AIRSQIVGGG GGAVATGSGT 
QQINAAAAAE AAEAKALLAT YRAQIEQFEK LRVELDLIHN AIDQTKREIA VLHTKSFNGE 
EMAKVNGELG AVVGGTEEAT QQILEAAEAI DQAATALGKV TSVDQQKALS EEIQERVIAI 
FEACNFQDLT GQRISKVMTT MKFIEHHIIT MMDIWGGVDA IKAHAPPIVD TREGDDRLLN 
GPKLDDEGHA SQDDIDAMFN