Gene RPB_1660 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1660 
Symbol 
ID3908647 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp1888944 
End bp1889648 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content63% 
IMG OID637883554 
ProductABC transporter related 
Protein accessionYP_485279 
Protein GI86748783 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTCG AAGTCTCTGA GCTGAACAGT TTCTACGGGC CCGCCCACAT CCTGTTCGAC 
GTCGGCTTCG CGGTCGGCGA GGGCGAGGTC GTCGCCATGC TCGGGCGCAA CGGCGCCGGC
AAGAGCACGA CCTTCCGATC AGTGGTGGGG CTGGTGTCCC GTCGTGAGGG AAAAGTGACG
TTCGAAGGTG AGGACGTCTC GCGGCTGCCG TCCTACGAGA TCGTGCGGCG CGGGCTCGGC
TATGTGCCGG AAGACCGGCG GATCTTCACC GAACTGAGCG TCGAGGAGAA TTTCGAAGTC
GGCCGCCAGA AAGCCCGCCC CGGCGTCGCC GCCTGGACGC CGGAGCGGAT CTACACGCTG
TTTCCCAATC TCGGCGAAAT GCGCAAGCGG CTCGGCGGCG ACATGAGCGG CGGCGAACAG
CAGATGCTCA GTATCGGCCG CACGCTGATG GGAAACCCCT CGCTCGTGCT GCTGGACGAA
CCCTCCGAAG GGCTCGCGCC CAAGATCGTC GAGCAGATGG CCGACGCCAT TCTGGCGATG
AAGCGCGAAG GGCTCAGCAT CGTCATTTCC GAGCAGAATC TGCATTTTGC CAAGCTGATC
TGCGATCGCG CCTATATTAT CGAGAAGGGA CGAATTCGAT TCTCCGGCAC CATCGACGAA
CTCGAGGCGC ACCCCGAAAT CCGGGATGCT TATCTCGCGG TGTGA
 
Protein sequence
MKLEVSELNS FYGPAHILFD VGFAVGEGEV VAMLGRNGAG KSTTFRSVVG LVSRREGKVT 
FEGEDVSRLP SYEIVRRGLG YVPEDRRIFT ELSVEENFEV GRQKARPGVA AWTPERIYTL
FPNLGEMRKR LGGDMSGGEQ QMLSIGRTLM GNPSLVLLDE PSEGLAPKIV EQMADAILAM
KREGLSIVIS EQNLHFAKLI CDRAYIIEKG RIRFSGTIDE LEAHPEIRDA YLAV