| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2040 |
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| Symbol | |
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| ID | 3367554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 2369211 |
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| End bp | 2374259 |
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| Gene Length | 5049 bp |
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| Protein Length | 1682 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637652389 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_235121 |
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| Protein GI | 66045280 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.76692 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCTT CTACTTCCGT GCACTCCAAC GCGCTCAATT TCATGAGTTG TCTGAAAAGC
GGCGTTGACC CACGCACCGG GCTATACAAC ATATCGATCA GCTTGCCCGA TCTGCAAAGC
AATGACCTGC GCGGGCCAGG GTTCCGACTC GACCTGTCCT ACAGCCAGCT CAATACGCTG
GACAGCGGCT ATGGCCTGGG CTGGAACATG CAGTTGTCGC AGTACGACCC TGCCACTCAG
ATCCTGTCCC TCAGCACAGG CGAGACCTTC CGGGTCGACG GCACCAGCAG CAACGGCCAA
CTGACGATGA CGGAAAAGAA GCTCGACACC TTCCACTTCT ACAAACTGGA CGATGAGTCT
TACCGGGTGG CGCACAAATC AGGTCTGGTG GAAATCCTCG AGCTGCACAG CAGCGGCAAT
AAGAGAATGG CCTGGCCGGT GAAAATCATC GCGCCGTCGG GGCACAGCAT TGCGCTCAAG
CACACGGTGT TCAACAGCAG CACCTACAGG CTTGCTTCAA TCACTGATGA CCTGGGTCAG
ACGCTGCTGA AAATTGCCCG CAGCACCACC TCCGTCGAGC TGGATCTGCA TCCGGACGAA
GGCACCGGCG ATACTCCGCT GGCGCGCTTT CTAATGACCC TCGCAGGCAG CGACAAACGC
GTATCGCGCA TCACCCTGCC CACCGAAAAC AAAGCGTCGT GGCGCTTCGA ATATGGCCTG
GAGAACGGCA ATCAATTATG CGTCAGGCAT GTGGAGACAC CTGCTGGAAG CAGCGAAAAC
GTTTACTACC AGGACGAGGG CCATGCGTTT CCATCCAGCG CCGGTCGCAT GCCCGTGCCC
AGGGTGACAA AACACGTCAT CGATCCCGGC CTGAATCAGG CAAAGATCGA TGTGCGATAT
ACCTACAAGG ACGGCCAGCA ACGCTCACGA AACTTTCTCG GTGCAGGGTT GCCCATCGCC
TGGGAGGACA ACGGCCTGGA CAATCTCTAT AAATATTTGC AGGACTACAA CTATGTCTGT
ACCGAAAGCC TGTGGGTCGA CAACAAGGCC GTGCGCAGCA TAGAGCGGAC CTTCAACCGC
TTCCACTTGC AGACCCTTGA AGTCACCACC CAGAACAAAA ACCAGCTGAC GGTCACGACC
GCCTACAACA TCCTGCAGGG CGAGCATTAC TCCAGACAGC CCAACGATTG TCAGCTACCC
AGCGAAATCA CCACCCGCTG GCAACGGCTG GACGCGCCTG AGCGGACCCG CACAGAGACC
GTCACCGATA CCTATGACAG TTACGGCAAC CTGCTGGTGC ATACCCGCGC CGACGGGATC
GAAGAAGTCA GCAGCTGGTA CCCGGCCGCC GGTGGCGACG GTTGCCCGGC CGATGCGGAA
GGGTTTGTCT CCCGACTGAA AGAAAAAGTG GTCAAGCCCG CTCCATCGTC GCAGCTCGGG
GCCCCGACCC TGGCCACACG TTATCGCTAC CAGACATTGC CTGCACTGGC CGACAGCGAG
TTACCCGACT GGATCGTGCC GGAAAGCGAA ACGCTGCTGC AGCTTGAAAG CGATGGAACC
TGTGTAGAGT TGCAGAAGGT CCTGCTGGAG TACATCAACC AGCCGGATGC GCCATTCCTG
CATGGTCGAA CCGGGAAAAA TATCGAGTCC CTGAATGGAA ACGACACCGT TACCGTCTAC
GAGTACAGCA AGAGCAAGAG CAGGCAACTG GAGGTCCCGG TACAACTCAT AGACATCACC
ACGATCGGCT TCGACAACGC CCGCATAAGC AAGCAGCAAC AACAGTCGTT GTTGACCGGT
CAGGTGCTGC TGACCCTGGA AGAAGGCGTG GAGATCCGCT ATGTCTATGA CGTGCTGAAC
CGGCTGACCA AAGAAACGAT CGCACCGGAC TCAAGTGATG AAGCCAGTCG CGAGTATCTG
TACACCCTGT GTTCCGCTGC GGGGCAGCAG GCAGAACAAG TGCTGGTCGA CGCCCGCAAG
GTCAAGACCC GCTCTGTTCT GGACGGCCTG GGCCGGGCAA TACTCGAGGA GCGGGACCAC
ATCGACAGCA ACGATCTGCA AGCGATGCGC ATAATCCATA CCGCGCAATA CAACGCTTGG
AACAATGTGC AACACGAAAC GGATTATGAC TGGTTCGCCA ACCAGCAACG GTTCGCCACG
CGAAACACCT ACGCCTATGA CGACTGGAAC GTCCAGTGTG TCATTACCTC GGATCACGGC
GTACAGACCC ACCAGTACTA CGACCCCATC GGCAATGAAG AACATAAAGG CCCTGTTCAG
AAGACCTGGG TGCAAAGCAG TGACGCAGAA CCGCTGATCA GTGGTCGCAG CGAGACCTGG
CTGAACATGT TCGGCAAGCC GGACAAGATC AAGATCAAGA TCAAGACCCA GAACGCAGAT
GGAGAAAAAG ATCAGGGTTC ACAAACCTTC CTCTACGACG GACTGGGGCG CTGCACGGAG
CAGACCGACG CGTCAAACCA CACAACCCTG TTCAGTTATG ACGCCTGGTC GCGCATGGTC
ACAACACGCT TGCCGGATGG AAGCGAGGCG CACCGTGATT ATGCACCGCA CAGCAACACC
GAGCTGCCGA TCGGCCTGAA AATGATGCAT TCGGACGGCA TTACCAACAC TCTGGCAGGC
AAACAGGCGT TCGACGGGCT GGGTCGTCTG ACACTGTCGC AGGCAGGGCA ACGTATCGAG
CAGTACGAGT ATGAGGACGG TCACAGGCAG GTCAAAACCC GCAAAACGGC CAAGGGCGAT
GACATCAGCT ACACCTACAA CCTGGCACTC ACCGACCAGA TCGTCTCCAG TACTGCACCG
GATGACACCG TCGGTTTTGG CTATGACAAC GTCAGCGCCC GCCTGACCTC TGCCACCAAT
CAGCAGGGCA AGCGCGTTTA TGCTTATGAC GCGCACAACC AGTTGACCAA AGAGACCTGG
AAAGATCTAC AAGGCCGGAC CTGGAAAACC GTGCATCGGA CATCCTTGCA GGGCCGTGCG
ATGTATCGCA CCGACGTCGA ACAAAAAGAC GTCAAAAACT CGGTTAAAGG CGTAGTCAAG
GGCCGCATCA AAGGTGGCGT CAAAGGCGTG GAAACGATTT ACCGGTACGA CGATTTCGGC
CGACTCGAAA ACGTTGTGCA GGGCAACGTG GAGGTGACAA TCCTGTATGA CACCCTGGGT
CAGCCCAGTG AGATGACAAC CTGTGACCAG GCCGCCGGAA CCCGCCTGGT AAACCGCATG
AAGTATGACG ACCAGGGACA GGAAATTCTC AGGACGCAGA TTGCAGGCAA TCACCCGGTA
CGTACGCTGG AACAGCAATG GCAAACCGAC GGGCTCATGC AAAGCCGTCA CTTGCAGGAA
GCAGGCAACA CGCTGCTGCT GGAAACATTC AAGTATGACG CTCGAGGTCG TCTGACCGGC
GTCATCTATT CAGGCAGCAC ATTGCCAGTG CACGCATCCG GCAGGGCGAT ACTCAAGCAG
ACGTTCATCT TCGACTCGCT GGACAACATG ATCCAGACCA CTACCGAATT TGCCGACGCC
AGCACTGAGA TGGCCTTTTT CCACTATGGC AAAGAGGATG ACCCCGATCC CCTCTCCAGG
GACCGATGCC AGTTGCTCGG CATCACCTAC AGGCCTCCAC GGGGCACACC GGACCCGACG
TTCCGCTATG ACGCCAACGG CAACCAGCTC GATGACGAAC ATGGCAACCG GTTGTACTAC
GACAGCCAGA GCCGCCTTTT ACGGGTGGAG AAACCGGCGG GTGAGCCGAT CAGCACATAC
GCTTACGACG GCCATGATCA TCTGGCCACC ACCCGCAATG GCAGTGACAG CGAAATACTG
CGTTTTTATC AGGACCAGCA GTTGAGCAGC ACGGTGCAGG ACGACCGACG TACTCAGTTT
CTGTACATAG ACGAGCAACC CGTCGGCCAG CAGACCATCG GAGAACCGGC AGAAACCCTG
CTGTTGCTGA CGGATGCGAA CCAGAGCGTG CTCGCTGAGT TCCAGCAGGA CAAGCTGCGA
ACAGCGGTCT ACAGCGCCTA CGGAGAACGT CACAGCGATG ACGCGCTGCT CAGCGTCGCA
GGGTTCAACG GCGAAATATG CGAAAAAGAC ACGGGCTGGT ATCTGCTGGG CAATGGCTAC
AGAGCCTACA ACCCCGGCAT GATGCGTTTT CACAGCCCTG ATTCCTTGAG CCCCTTTGGT
GCAGGCGGGG TCAACCCCTA CACTTATTGC CTGGGCAATC CCATTGCCTG GCGCGACCCC
ACCGGGCATG ACGCCAGCTC CCAGAGCGGC CGGCTGCGAA GGCCCGATGA GGATGCGATA
CCTGCAGAGA TGCCGGGGGG CATGGGAATA CAGACCTGGA TCATGCTCGC GGTTGGCATA
GTGTTCACGG CAGTGGGTGC CTACGCGACA GTTGCATCGT TTGGATTGGC CGCGCCCGGC
TCGGTTCCTG TAACGGTCCT GGGTATGACG ATGACCGCAC AGACGGCGGC CTACGTCGCA
ACAGGGTTGC TGGCGGCAGG GACCGTTCTG GGGGCTGCAT CAACGGCTGC CACTACTTAT
GGTGCGGTGA AGGGAAACGA GACAGCCTTT CGGTTAGGGG AATACCTGGC CTATGCCGCG
ATACCTTTAG ACATCGCTGG GGGGGTATTC AGAAGTGCGG TTAAAAGCGC GATCAAGGCT
GCGTCCAAGG CTTCCAGCCG GCGAGTTTCC GAGACAGCGA GTAGAGTTTC AGTCGGGACG
ATTGACGATT CACCGGTCGA TTCTGTAACG GGTACGCGGC GTGGATCTGC TCCAGCGAGT
ATGGACGCAC CCGGGCCTGT TGGGGGTGTG AGGATTCCAA GAGTGCGGGT GAACAGGCCT
GAACCACCTA CACCGAACCC TCGGCCGGAG AGCGGCCCTT TCGCCAGGCG CGCGCGGACA
CCGACAGATG ACCCTGCAGC AGCACCGTCC AGCGGTCCGT CACGGTTTGC GGGCAGAACG
GTTTTTTTAG TACGGCTTCG CAAACTCGGG GAAAACGTCT TCGTGCTTAA ATACATGCCT
CGCCGGTGA
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| Protein sequence | MAASTSVHSN ALNFMSCLKS GVDPRTGLYN ISISLPDLQS NDLRGPGFRL DLSYSQLNTL
DSGYGLGWNM QLSQYDPATQ ILSLSTGETF RVDGTSSNGQ LTMTEKKLDT FHFYKLDDES
YRVAHKSGLV EILELHSSGN KRMAWPVKII APSGHSIALK HTVFNSSTYR LASITDDLGQ
TLLKIARSTT SVELDLHPDE GTGDTPLARF LMTLAGSDKR VSRITLPTEN KASWRFEYGL
ENGNQLCVRH VETPAGSSEN VYYQDEGHAF PSSAGRMPVP RVTKHVIDPG LNQAKIDVRY
TYKDGQQRSR NFLGAGLPIA WEDNGLDNLY KYLQDYNYVC TESLWVDNKA VRSIERTFNR
FHLQTLEVTT QNKNQLTVTT AYNILQGEHY SRQPNDCQLP SEITTRWQRL DAPERTRTET
VTDTYDSYGN LLVHTRADGI EEVSSWYPAA GGDGCPADAE GFVSRLKEKV VKPAPSSQLG
APTLATRYRY QTLPALADSE LPDWIVPESE TLLQLESDGT CVELQKVLLE YINQPDAPFL
HGRTGKNIES LNGNDTVTVY EYSKSKSRQL EVPVQLIDIT TIGFDNARIS KQQQQSLLTG
QVLLTLEEGV EIRYVYDVLN RLTKETIAPD SSDEASREYL YTLCSAAGQQ AEQVLVDARK
VKTRSVLDGL GRAILEERDH IDSNDLQAMR IIHTAQYNAW NNVQHETDYD WFANQQRFAT
RNTYAYDDWN VQCVITSDHG VQTHQYYDPI GNEEHKGPVQ KTWVQSSDAE PLISGRSETW
LNMFGKPDKI KIKIKTQNAD GEKDQGSQTF LYDGLGRCTE QTDASNHTTL FSYDAWSRMV
TTRLPDGSEA HRDYAPHSNT ELPIGLKMMH SDGITNTLAG KQAFDGLGRL TLSQAGQRIE
QYEYEDGHRQ VKTRKTAKGD DISYTYNLAL TDQIVSSTAP DDTVGFGYDN VSARLTSATN
QQGKRVYAYD AHNQLTKETW KDLQGRTWKT VHRTSLQGRA MYRTDVEQKD VKNSVKGVVK
GRIKGGVKGV ETIYRYDDFG RLENVVQGNV EVTILYDTLG QPSEMTTCDQ AAGTRLVNRM
KYDDQGQEIL RTQIAGNHPV RTLEQQWQTD GLMQSRHLQE AGNTLLLETF KYDARGRLTG
VIYSGSTLPV HASGRAILKQ TFIFDSLDNM IQTTTEFADA STEMAFFHYG KEDDPDPLSR
DRCQLLGITY RPPRGTPDPT FRYDANGNQL DDEHGNRLYY DSQSRLLRVE KPAGEPISTY
AYDGHDHLAT TRNGSDSEIL RFYQDQQLSS TVQDDRRTQF LYIDEQPVGQ QTIGEPAETL
LLLTDANQSV LAEFQQDKLR TAVYSAYGER HSDDALLSVA GFNGEICEKD TGWYLLGNGY
RAYNPGMMRF HSPDSLSPFG AGGVNPYTYC LGNPIAWRDP TGHDASSQSG RLRRPDEDAI
PAEMPGGMGI QTWIMLAVGI VFTAVGAYAT VASFGLAAPG SVPVTVLGMT MTAQTAAYVA
TGLLAAGTVL GAASTAATTY GAVKGNETAF RLGEYLAYAA IPLDIAGGVF RSAVKSAIKA
ASKASSRRVS ETASRVSVGT IDDSPVDSVT GTRRGSAPAS MDAPGPVGGV RIPRVRVNRP
EPPTPNPRPE SGPFARRART PTDDPAAAPS SGPSRFAGRT VFLVRLRKLG ENVFVLKYMP
RR
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