Gene Psyr_1184 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1184 
Symbol 
ID3366678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1338293 
End bp1339618 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content59% 
IMG OID637651525 
Producttype III helper protein HrpW1 
Protein accessionYP_234276 
Protein GI66044435 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.211632 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATCG GTATCAACTC ATCCACCTCC TACCAACCCG CTTCAACCCA GCTGGACTTC 
TCGGCGCTGA GCGGCAAGAG TCCGCAGACC AATACGTTCA GCGATGAGAG CACTGCACAG
GGCGTCGACC CGAGTGCCCT GCTGTTCGAC ACTGCCAGAC AGAAAGACGT CAGCTTCGGA
CAGCCCGACA ATACGGTTCA AAACCCCACC GACAGCAGCG CTGCAACTGA CCCTCAATCC
AACGTCGTCA AGCTGCTCAG TGCACTCGTC ACATCGCTGC TGCAAATGCT CATGAACCTC
AATAAAAAAC AGGACACGGG TCAGGACTCC AACGAGTGGC AAGACCCGTT TCAAAACGAG
GGAGGACTCG GTACGCCATC GGCCGAAGGC AGTGACGGTG GTACTCAGGA GGCTTCAGGC
GGTGACGAGG GCGGCGGTAC AACGGCGGCG ACGGGTGGTG ACGGTGGTGG CGGTACATCC
CCGACCACTG AAGGTGACGG CGGCGGTACA TCTCCAACCG CTGAAGGTGA CGGCGGCGGT
AGTTATGTGT CGACTGGCGC AGACGGCAGC GGCGCGCCTT CGACCGAGGA CGGAACCGGC
GGAGGCGGTG GCAGTGATGG CGTGACGCCT CAAGTCACCC CGCAACTGGC CAATCCCGGC
CGCAACTCGG GCAACGGCAC GGTTTCGGAT ACAACGGGCT CTCTTGAGCA ATCCGGCGAA
GTCAATGTCG TGAAAGACAC CATCAAAGTC GGTGCTGGCC AGGTGTTTGA CGGCCACGGT
GCAACCTTTA CCGCCGACAA GTCGATGGGC ACCGGCGACC AGGACGAACA TCAGAAGCCC
CTGTTCGAAC TGGCCGAAGG CGCTGTGCTG AAAAACGTGA ACCTGGGCGA GAACGAAGCC
GACGGCATCC ACGTGAATGC CAAAAACTCG GAGCAAGTCA CCATTGATAA CGTGCACGCC
CAGAACGTCG GTGAAGACAT GATCACGGTC AAGGGCGAAG GCGGCGCAAA GGTCACCAAC
CTGAACATCA CTAACAGCAG CGCCAACGGT GCCGATGACA AGGTCATTCA GCTCAATGCC
GATACCCACC TGAAAGTCGA CGGTTTCAAG GCCACCGATT TCGGTACGCT GGTCCGCACC
AATGGTGGCA AGCAGTTTGA TGACATGAGT GTCGAGCTCA ATGGCGTGGA CGCGACCCAT
GGCAAGTTCG CACTCGTCAA AAGCGACAGT GACGATCTGA AACTGGCCAC TGGCGACATC
GCCATGACCG ACGTCAAGCA CGCCTATGAC AAGACCAAGG CGTCTACCCA GCACACCGAG
CTCTGA
 
Protein sequence
MSIGINSSTS YQPASTQLDF SALSGKSPQT NTFSDESTAQ GVDPSALLFD TARQKDVSFG 
QPDNTVQNPT DSSAATDPQS NVVKLLSALV TSLLQMLMNL NKKQDTGQDS NEWQDPFQNE
GGLGTPSAEG SDGGTQEASG GDEGGGTTAA TGGDGGGGTS PTTEGDGGGT SPTAEGDGGG
SYVSTGADGS GAPSTEDGTG GGGGSDGVTP QVTPQLANPG RNSGNGTVSD TTGSLEQSGE
VNVVKDTIKV GAGQVFDGHG ATFTADKSMG TGDQDEHQKP LFELAEGAVL KNVNLGENEA
DGIHVNAKNS EQVTIDNVHA QNVGEDMITV KGEGGAKVTN LNITNSSANG ADDKVIQLNA
DTHLKVDGFK ATDFGTLVRT NGGKQFDDMS VELNGVDATH GKFALVKSDS DDLKLATGDI
AMTDVKHAYD KTKASTQHTE L